Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 1.8e-56 222.2 105 100.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 1.1e-40 169.9 105 78.1
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 2.6e-31 138.7 104 69.2
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 5.0e-30 134.4 105 65.7
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 2.5e-29 132.1 87 74.7
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 7.2e-29 130.6 105 61.0
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 6.1e-28 127.5 87 72.4
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 2.0e-26 122.5 104 61.5
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 7.0e-24 114.0 106 60.4
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 9.1e-24 113.6 94 62.8
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 2.0e-23 112.5 106 57.5
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.5e-23 111.7 93 62.4
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 5.9e-23 110.9 92 59.8
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 7.7e-23 110.5 89 64.0
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.0e-22 110.2 100 57.0
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 5.0e-22 107.8 92 60.9
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 3.2e-21 105.1 100 57.0
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 4.2e-21 104.8 105 56.2
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 7.2e-21 104.0 103 57.3
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.2e-20 103.2 92 56.5
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 2.1e-20 102.4 90 58.9
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 3.6e-20 101.7 94 58.5
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 8.0e-20 100.5 98 55.1
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 1.4e-19 99.8 91 56.0
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 2.3e-19 99.0 98 53.1
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 6.8e-19 97.4 91 54.9
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 2.0e-18 95.9 92 55.4
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 3.4e-18 95.1 106 50.9
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 3.4e-18 95.1 106 50.9
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 3.4e-18 95.1 90 53.3
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 4.4e-18 94.7 93 55.9
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 9.8e-18 93.6 93 53.8
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 1.3e-17 93.2 92 52.2
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 2.2e-17 92.4 101 51.5
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 2.8e-17 92.0 94 52.1
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 3.7e-17 91.7 86 55.8
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 4.8e-17 91.3 86 53.5
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 2.4e-16 89.0 103 51.5
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 4.1e-16 88.2 92 53.3
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 1.6e-15 86.3 92 50.0
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 2.0e-15 85.9 94 48.9
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 4.5e-15 84.7 83 50.6
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 4.5e-15 84.7 95 48.4
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 5.9e-15 84.3 94 50.0
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 7.7e-15 84.0 92 46.7
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.0e-14 83.6 87 52.9
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 1.0e-14 83.6 102 47.1
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.3e-14 83.2 89 48.3
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 5.0e-14 81.3 94 44.7
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 1.9e-13 79.3 89 50.6
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.5e-13 79.0 81 53.1
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 2.5e-13 79.0 87 49.4
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.5e-13 79.0 81 53.1
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.5e-13 79.0 81 53.1
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 7.2e-13 77.4 90 45.6
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.6e-12 76.3 91 49.5
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.6e-12 76.3 81 49.4
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.7e-12 75.5 92 47.8
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 2.7e-12 75.5 92 43.5
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.0e-11 72.0 81 51.9
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.2e-10 70.1 81 49.4
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.4e-10 68.6 76 51.3
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 7.5e-10 67.4 95 40.0
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 9.8e-10 67.0 95 40.0
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.7e-09 66.2 86 43.0
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 2.2e-09 65.9 84 41.7
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 8.3e-09 63.9 81 39.5
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 8.3e-09 63.9 81 39.5
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 8.3e-09 63.9 69 52.2
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.4e-08 63.2 86 40.7
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 2.4e-08 62.4 81 38.3
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 2.4e-08 62.4 81 38.3
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 2.4e-08 62.4 81 38.3
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 9.2e-08 60.5 81 39.5
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 2.7e-07 58.9 81 39.5
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 4.5e-07 58.2 81 38.3
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 5.9e-07 57.8 81 39.5
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 7.7e-07 57.4 81 40.7
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 1.3e-06 56.6 88 33.0
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.7e-06 56.2 102 37.3
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.3e-06 55.8 81 37.0
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 2.9e-06 55.5 88 33.0
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 5.0e-06 54.7 81 34.6
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 5.0e-06 54.7 90 42.2
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 6.6e-06 54.3 88 31.8
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 6.6e-06 54.3 81 33.3


User provided reference genes

Program Settings