Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 2.5e-110 402.1 201 100.0
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.5e-78 296.6 151 97.4
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 9.4e-78 293.9 151 95.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 7.2e-70 267.7 152 90.1
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.2e-69 266.9 152 89.5
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.7e-69 265.0 152 88.8
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.0e-68 263.8 152 88.8
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.0e-67 259.6 152 86.8
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 3.4e-67 258.8 152 86.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.4e-67 258.8 152 86.2
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.9e-62 243.0 156 79.5
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 7.2e-62 241.1 156 78.8
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 9.5e-62 240.7 156 76.3
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.2e-61 240.4 156 76.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.0e-60 237.3 155 76.1
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.8e-60 236.5 156 75.6
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.2e-59 233.8 159 74.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.0e-59 233.0 155 75.5
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 5.7e-59 231.5 156 72.4
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 5.7e-59 231.5 156 75.0
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.2e-58 229.6 157 75.8
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.8e-58 229.2 171 67.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.7e-58 228.8 182 67.0
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 6.3e-58 228.0 157 74.5
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 8.3e-58 227.6 153 74.5
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 8.3e-58 227.6 165 70.9
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.1e-57 227.3 164 70.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.1e-57 225.7 155 74.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.1e-57 225.3 156 74.4
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 9.2e-57 224.2 156 71.2
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.6e-56 223.4 157 73.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.6e-56 223.4 158 70.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.0e-56 223.0 157 72.0
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.7e-56 222.6 154 73.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.5e-56 222.2 157 70.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 5.9e-56 221.5 156 73.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.9e-56 221.5 154 73.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.9e-56 221.5 163 68.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.0e-55 220.7 156 69.9
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.0e-55 220.7 156 71.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.0e-55 220.7 155 72.3
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.7e-55 219.9 177 66.1
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.9e-55 219.2 154 71.4
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 3.8e-55 218.8 156 69.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.8e-55 218.8 154 71.4
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.6e-55 218.0 156 69.9
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 6.6e-55 218.0 156 67.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.1e-54 217.2 156 71.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.1e-54 217.2 156 69.2
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.5e-54 216.9 156 69.2
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.5e-54 216.1 157 68.8
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 4.3e-54 215.3 156 68.6
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 7.3e-54 214.5 158 69.0
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.2e-53 213.8 153 72.5
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-53 213.4 156 70.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-53 213.4 156 70.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.1e-53 213.0 156 70.5
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.1e-53 213.0 158 68.4
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.8e-53 212.6 153 71.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.7e-53 211.8 156 67.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.4e-52 210.3 149 70.5
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.4e-52 210.3 157 68.8
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.1e-52 209.1 160 67.5
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 6.8e-52 208.0 164 65.2
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.2e-51 207.2 157 63.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-51 207.2 156 67.3
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 2.0e-51 206.5 166 64.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 9.8e-51 204.1 158 65.2
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.7e-50 203.4 156 62.8
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.2e-50 203.0 157 65.0
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.9e-50 202.6 156 64.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 3.7e-50 202.2 161 62.7
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 6.4e-50 201.4 156 65.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.3e-50 201.1 156 62.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-49 199.9 157 62.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.2e-49 199.1 158 63.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.2e-48 197.2 155 63.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.2e-48 197.2 157 61.8
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.6e-48 196.8 155 65.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 6.0e-48 194.9 155 64.5
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 7.8e-48 194.5 164 60.4
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.7e-47 193.4 158 62.7
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.3e-47 193.0 190 53.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 2.3e-47 193.0 151 62.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 3.9e-47 192.2 158 62.7
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.9e-47 192.2 157 60.5
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 5.0e-47 191.8 158 62.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.6e-47 191.4 158 61.4
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.9e-46 189.9 158 61.4
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.9e-46 189.9 156 60.9
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 9.5e-46 187.6 158 60.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.6e-45 186.8 156 57.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 6.2e-45 184.9 160 59.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 8.0e-45 184.5 158 62.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 5.2e-44 181.8 160 57.5
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-43 180.6 159 59.1
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.5e-43 180.3 160 58.8
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.6e-43 179.5 159 59.1
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.6e-43 179.5 159 59.1
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.6e-43 179.5 123 69.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 3.4e-43 179.1 159 59.1
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.8e-43 178.3 157 62.4
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.8e-43 178.3 158 58.9
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.3e-42 177.2 162 57.4
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.9e-42 176.0 159 57.9
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.7e-42 175.6 159 57.9
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 8.3e-42 174.5 124 68.5
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 8.3e-42 174.5 156 62.2
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 7.0e-41 171.4 114 75.4
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 7.8e-40 167.9 158 54.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 7.8e-40 167.9 170 52.4
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.3e-39 167.2 119 69.7
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.5e-38 163.7 128 65.6
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.5e-38 162.9 123 61.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.1e-37 159.8 158 55.1
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.1e-37 159.8 158 55.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.4e-36 157.1 153 54.2
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.8e-36 156.8 154 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.9e-34 148.7 160 49.4
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.4e-34 148.3 128 59.4
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.1e-33 147.5 153 45.1
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.4e-33 147.1 156 49.4
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.7e-32 142.9 157 50.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 4.6e-32 142.1 124 58.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.0e-32 141.7 114 58.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-31 140.2 148 50.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.9e-30 136.7 158 51.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.5e-30 136.3 96 62.5
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 5.6e-30 135.2 111 59.5
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.6e-30 135.2 158 51.3
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 5.6e-30 135.2 144 50.7
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 7.3e-30 134.8 119 58.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 9.5e-30 134.4 122 49.2
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-29 134.0 158 51.3
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 2.8e-29 132.9 162 48.8
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.8e-26 122.5 120 46.7
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 6.4e-26 121.7 121 47.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.4e-25 119.8 89 67.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.2e-25 119.4 133 45.1
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.7e-23 113.6 74 73.0
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.0e-23 112.8 185 42.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 5.6e-22 108.6 76 68.4
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 3.4e-19 99.4 134 40.3
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.1e-17 94.4 63 63.5
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.5e-14 84.0 156 38.5
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 9.6e-14 81.3 125 42.4
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.8e-13 79.7 63 50.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 3.6e-13 79.3 61 72.1
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 6.2e-13 78.6 76 46.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.5e-11 73.9 45 75.6
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.0e-11 73.6 53 71.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.4e-11 72.8 57 66.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.5e-11 72.4 53 71.7
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.5e-11 72.4 53 71.7
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 9.9e-11 71.2 55 70.9
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.3e-10 70.9 119 34.5
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.2e-10 70.1 60 66.7
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.9e-09 67.0 115 35.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.2e-09 66.2 77 51.9
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 7.1e-09 65.1 63 42.9
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.7e-08 63.2 57 59.6
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.5e-08 62.8 55 60.0
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 1.0e-07 61.2 114 37.7
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.3e-07 60.8 65 40.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.0e-07 59.7 59 57.6
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 6.7e-07 58.5 53 50.9
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.3e-06 55.8 44 56.8


User provided reference genes

Program Settings