Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 3.7e-307 1057.4 535 100.0
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 1.6e-278 962.2 533 90.2
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 3.5e-273 944.5 535 88.8
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 9.3e-266 919.8 535 86.2
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 6.1e-257 890.6 537 83.4
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.1e-256 887.5 537 83.2
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.7e-256 887.1 534 83.7
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 6.7e-256 887.1 534 83.7
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.3e-254 882.9 534 83.9
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.7e-254 881.3 534 83.3
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 3.5e-228 795.0 528 75.4
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 5.9e-228 794.3 535 75.5
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 3.0e-224 781.9 516 76.4
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.8e-216 756.1 530 72.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.0e-216 755.0 540 72.4
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 3.1e-213 745.3 538 70.6
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.5e-212 741.9 538 70.3
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 3.5e-212 741.9 534 71.3
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.5e-212 741.9 551 69.0
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.9e-211 738.8 538 69.9
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.9e-211 738.8 515 72.2
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 4.7e-209 731.5 535 70.3
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.4e-208 729.9 492 75.4
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 5.2e-208 728.0 512 71.9
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 5.7e-207 724.5 509 72.1
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 6.4e-206 721.1 524 69.5
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 8.3e-206 720.7 533 69.4
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 8.3e-206 720.7 545 68.4
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 3.2e-205 718.8 530 68.9
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 4.1e-205 718.4 506 71.9
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 7.8e-204 714.1 516 70.0
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 1.0e-203 713.8 531 68.0
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.0e-203 713.8 542 66.4
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 6.6e-203 711.1 542 67.2
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.6e-201 706.4 531 69.3
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 8.0e-201 704.1 506 70.0
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 5.2e-200 701.4 533 67.4
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 2.2e-198 696.0 538 66.9
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 2.9e-198 695.7 535 66.2
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 4.9e-198 694.9 538 66.9
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 8.3e-198 694.1 544 66.0
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 8.3e-198 694.1 531 67.6
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.1e-197 693.7 510 71.6
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 5.4e-197 691.4 512 68.8
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.6e-196 688.3 533 66.4
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 5.0e-195 684.9 535 66.2
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 1.9e-194 682.9 522 66.5
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.2e-193 680.2 510 67.1
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 3.1e-192 675.6 503 67.2
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 4.0e-192 675.2 536 65.3
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.7e-190 669.8 527 65.8
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 4.9e-190 668.3 523 66.3
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 1.9e-189 666.4 541 64.1
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 5.4e-189 664.8 502 66.7
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 7.1e-189 664.5 494 67.4
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 7.8e-188 661.0 526 62.4
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 3.0e-187 659.1 541 64.1
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 2.5e-186 656.0 527 63.6
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.3e-184 649.4 517 64.0
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 3.4e-183 645.6 534 62.2
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.1e-181 640.6 519 64.0
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 3.2e-181 639.0 537 62.0
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 7.1e-181 637.9 521 64.9
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 3.5e-180 635.6 691 53.0
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 1.5e-178 630.2 519 64.5
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.9e-178 629.8 512 60.7
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.3e-178 629.0 517 61.7
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 4.3e-178 628.6 506 63.8
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 5.6e-178 628.2 516 62.0
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 2.1e-177 626.3 537 60.7
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.1e-177 626.3 533 62.1
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 1.8e-176 623.2 564 59.2
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 1.8e-176 623.2 536 60.4
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 2.0e-175 619.8 537 60.9
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.3e-174 617.1 570 56.3
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 2.2e-174 616.3 528 59.1
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 4.9e-174 615.1 534 58.4
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 8.4e-174 614.4 539 59.7
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 3.2e-173 612.5 520 62.9
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 2.7e-172 609.4 502 60.8
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 6.6e-171 604.7 467 66.6
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 2.5e-170 602.8 524 60.5
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 2.5e-170 602.8 531 64.2
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 5.6e-170 601.7 525 61.0
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 2.1e-169 599.7 524 60.1
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 2.8e-169 599.4 524 60.3
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 5.3e-168 595.1 537 57.5
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 9.0e-168 594.3 508 59.6
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 2.2e-166 589.7 537 57.2
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 3.8e-166 589.0 523 58.3
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-165 586.6 537 56.6
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.7e-164 582.8 534 56.9
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 4.6e-164 582.0 569 55.7
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 8.7e-163 577.8 538 58.0
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-162 576.6 546 55.9
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 8.1e-161 571.2 534 58.2
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 5.3e-160 568.5 407 70.0
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 4.2e-157 558.9 539 55.7
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 7.1e-157 558.1 436 64.9
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.3e-155 553.1 540 54.8
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 5.8e-151 538.5 541 54.7
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.5e-149 533.1 498 56.4
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.3e-146 522.7 663 48.4
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.3e-139 500.0 462 57.1
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.7e-137 492.7 564 50.5
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 4.8e-129 465.7 328 73.2
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.3e-121 441.0 390 60.3
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 3.7e-121 439.5 352 63.4
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 3.8e-118 429.5 313 70.6
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 6.1e-116 422.2 330 67.9
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.7e-113 414.1 306 70.9
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 3.8e-102 376.3 341 60.1
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 7.5e-98 362.1 525 38.5
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.1e-96 358.2 379 53.6
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.1e-96 358.2 539 37.7
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.4e-96 357.8 337 59.6
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.6e-92 344.4 522 37.9
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 1.5e-90 337.8 355 53.8
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.3e-89 334.7 511 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 2.9e-89 333.6 528 37.3
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 7.0e-80 302.4 382 46.9
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 9.2e-80 302.0 316 52.2
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 7.6e-66 255.8 197 61.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.4e-64 251.5 148 81.1
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 6.9e-59 232.6 168 69.6
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 2.9e-57 227.3 175 61.7
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 5.6e-53 213.0 120 84.2
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 6.9e-51 206.1 145 65.5
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 9.0e-51 205.7 141 69.5
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.7e-49 201.4 122 77.0
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 2.1e-47 194.5 199 53.3
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.9e-41 174.1 92 82.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.4e-40 171.8 583 26.4
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.0e-38 164.1 159 59.1
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.5e-32 143.3 100 74.0
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-28 132.1 99 62.6
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.7e-28 130.6 133 51.1
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 6.5e-25 119.8 109 52.3
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 8.5e-25 119.4 125 47.2
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 6.7e-22 109.8 103 57.3
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.8e-20 104.4 83 63.9
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.9e-19 99.8 53 81.1
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 6.5e-17 93.2 74 59.5
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.1e-16 92.4 67 64.2
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 7.2e-16 89.7 74 60.8
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 1.4e-14 85.5 107 48.6
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.8e-14 85.1 88 53.4
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 1.5e-13 82.0 157 40.8
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 5.3e-11 73.6 80 46.2
FvH4_7g08791 Fragaria vesca HOM05D004567 ORTHO05D045614 2.1e-07 61.6 49 67.3
FAN10G2073 Fragaria x ananassa HOM05D004567 ORTHO05D045614 3.0e-06 57.8 49 65.3


User provided reference genes

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