Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 3.5e-183 644.8 319 100.0
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 2.4e-160 568.9 311 89.1
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.2e-159 566.6 311 89.1
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 7.7e-159 563.9 311 88.4
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.6e-156 556.2 319 85.9
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 4.0e-155 551.6 329 83.6
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 4.6e-143 511.5 310 81.0
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 8.6e-142 507.3 276 88.8
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.6e-140 503.1 297 79.8
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 2.6e-138 495.7 306 76.5
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 2.9e-137 492.3 306 76.8
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.4e-136 490.0 311 75.2
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 3.2e-136 488.8 313 75.7
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.1e-135 486.1 309 75.1
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 7.8e-135 484.2 310 76.5
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 7.8e-135 484.2 311 75.2
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 3.3e-133 478.8 311 75.6
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 4.3e-133 478.4 303 75.6
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 9.5e-133 477.2 313 74.1
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 8.1e-132 474.2 279 78.9
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 1.1e-131 473.8 314 75.2
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.2e-130 470.3 305 79.0
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 5.8e-130 468.0 289 76.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.3e-129 466.8 335 68.1
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 2.2e-129 466.1 314 73.9
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 3.7e-129 465.3 286 75.2
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 8.3e-129 464.2 300 73.7
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.4e-128 462.6 286 74.8
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 2.4e-128 462.6 336 69.6
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 3.2e-128 462.2 312 70.8
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 4.1e-128 461.8 330 70.3
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.7e-126 456.4 283 75.3
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.3e-126 456.1 310 70.3
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 2.3e-126 456.1 299 73.2
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.5e-125 452.6 286 73.4
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 3.3e-125 452.2 272 77.2
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 5.6e-125 451.4 292 73.6
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 1.6e-124 449.9 293 72.0
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.6e-124 449.9 293 74.1
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 2.1e-124 449.5 298 72.1
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 3.6e-124 448.7 313 70.3
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 3.6e-124 448.7 289 72.7
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 1.4e-123 446.8 289 72.3
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 1.8e-123 446.4 301 71.1
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.4e-123 446.0 293 72.0
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 4.0e-123 445.3 325 68.0
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.5e-122 443.4 304 70.4
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 2.6e-122 442.6 293 71.0
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 9.9e-122 440.7 313 70.0
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.3e-121 440.3 316 70.3
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.7e-121 439.9 323 68.4
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 3.8e-121 438.7 301 70.1
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 8.4e-121 437.6 311 69.1
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.4e-120 436.0 275 72.7
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 3.2e-120 435.6 316 69.0
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 4.2e-120 435.3 313 70.3
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 5.4e-120 434.9 299 69.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 5.4e-120 434.9 289 70.6
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 7.1e-120 434.5 299 70.2
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 7.1e-120 434.5 305 70.2
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 9.3e-120 434.1 315 68.3
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 9.3e-120 434.1 293 72.4
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 2.1e-119 433.0 293 71.7
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 3.5e-119 432.2 414 56.0
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 7.8e-119 431.0 340 65.9
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.3e-118 430.3 289 69.6
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.3e-118 430.3 311 67.8
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 2.3e-118 429.5 305 68.5
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 3.0e-118 429.1 305 69.2
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 1.1e-117 427.2 303 71.6
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 4.3e-117 425.2 295 67.8
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 4.3e-117 425.2 306 67.6
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.6e-116 423.3 323 65.9
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.1e-115 420.6 326 64.4
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.2e-114 417.2 274 74.5
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 1.1e-112 410.6 290 69.3
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 3.2e-112 409.1 335 63.0
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 5.4e-112 408.3 284 67.3
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 9.3e-112 407.5 249 81.5
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 3.8e-105 385.6 348 59.2
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 7.1e-104 381.3 315 60.3
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 7.4e-101 371.3 291 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 1.3e-97 360.5 298 59.1
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 4.6e-95 352.1 328 50.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 2.1e-92 343.2 250 69.2
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 3.1e-91 339.3 291 56.7
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 5.9e-82 308.5 275 54.5
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 1.1e-80 304.3 196 75.0
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 5.5e-80 302.0 176 79.5
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 4.6e-79 298.9 169 81.1
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 7.4e-77 291.6 180 77.2
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 6.3e-76 288.5 167 82.0
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 1.1e-75 287.7 176 77.3
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.4e-75 287.3 184 74.5
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.0e-69 266.9 270 54.8
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.6e-66 257.3 279 44.1
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 5.9e-66 255.4 289 43.9
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.8e-65 252.7 178 64.6
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.0e-62 243.0 290 44.5
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 7.0e-59 231.9 162 69.8
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.2e-57 226.9 147 76.9
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 5.4e-51 205.7 133 69.9
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.0e-33 148.3 73 84.9
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.3e-33 147.9 280 35.4
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.0e-30 138.3 81 76.5
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 4.0e-30 136.3 341 30.2
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 2.2e-28 130.6 62 91.9
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 1.3e-25 121.3 332 26.8
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.1e-24 118.2 78 66.7
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 6.8e-22 109.0 134 47.0
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.9e-19 100.9 158 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 2.3e-14 84.0 238 26.9
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 1.2e-10 71.6 177 32.2
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-10 70.5 68 45.6
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 7.8e-10 68.9 354 22.9
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 4.7e-07 59.7 159 29.6


User provided reference genes

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