Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 2.6e-62 241.9 125 100.0
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 1.8e-47 192.6 150 73.3
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 4.2e-36 154.8 146 61.6
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 2.1e-27 125.9 153 49.7
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 4.0e-26 121.7 162 50.0
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.6e-22 109.8 146 47.3
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 2.0e-22 109.4 146 47.9
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.7e-22 109.0 148 44.6
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 4.6e-22 108.2 131 49.6
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 4.6e-22 108.2 132 47.0
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 6.0e-22 107.8 157 42.7
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 7.8e-22 107.5 141 44.7
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.0e-21 107.1 146 46.6
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.0e-21 107.1 157 43.9
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 1.7e-21 106.3 157 42.7
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 2.3e-21 105.9 161 42.9
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 1.5e-20 103.2 132 46.2
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.5e-20 103.2 132 46.2
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 3.3e-20 102.1 157 41.4
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 5.6e-20 101.3 135 43.0
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 5.6e-20 101.3 138 43.5
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 5.6e-20 101.3 142 42.3
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 1.6e-19 99.8 151 43.0
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 3.6e-19 98.6 132 46.2
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 6.2e-19 97.8 136 44.1
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 1.4e-18 96.7 149 45.6
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 2.3e-18 95.9 132 42.4
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.1e-18 95.5 140 42.9
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 5.2e-18 94.7 139 43.2
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 5.2e-18 94.7 132 42.4
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.2e-17 93.6 135 43.0
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 1.5e-17 93.2 139 43.9
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.0e-17 92.8 140 43.6
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 3.4e-17 92.0 144 41.0
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 3.4e-17 92.0 134 42.5
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 7.5e-17 90.9 151 39.7
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 9.8e-17 90.5 146 39.0
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.3e-16 90.1 135 43.0
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.3e-16 90.1 163 36.2
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 1.7e-16 89.7 136 44.1
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 3.7e-16 88.6 136 43.4
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 6.4e-16 87.8 151 37.1
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 8.3e-16 87.4 152 40.1
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 8.3e-16 87.4 148 41.2
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 8.3e-16 87.4 148 41.2
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 1.1e-15 87.0 138 39.1
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.1e-15 87.0 140 41.4
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 1.4e-15 86.7 144 38.2
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.4e-15 86.7 135 42.2
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.4e-15 85.9 131 45.0
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.4e-15 85.9 129 40.3
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.2e-15 85.5 132 40.9
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 4.1e-15 85.1 138 38.4
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 4.1e-15 85.1 140 40.7
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 7.0e-15 84.3 138 41.3
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 9.2e-15 84.0 132 43.9
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 9.2e-15 84.0 137 38.7
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.2e-14 83.6 147 38.1
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 2.1e-14 82.8 140 38.6
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.1e-14 82.8 152 37.5
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.7e-14 82.4 151 37.1
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 4.6e-14 81.6 140 41.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.0e-14 81.3 143 39.9
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.3e-13 80.1 132 39.4
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.7e-13 79.7 140 38.6
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 2.3e-13 79.3 148 35.1
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 3.9e-13 78.6 191 34.0
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.6e-13 77.4 146 34.9
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.1e-12 77.0 173 34.1
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 3.3e-12 75.5 137 40.1
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 4.3e-12 75.1 141 36.9
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 7.3e-12 74.3 134 37.3
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 9.5e-12 73.9 139 36.7
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 9.5e-12 73.9 138 39.9
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 9.5e-12 73.9 141 36.9
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 1.2e-11 73.6 144 36.8
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.1e-11 72.8 145 35.2
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 4.7e-11 71.6 133 35.3
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 4.7e-11 71.6 127 40.9
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 6.2e-11 71.2 134 35.1
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 8.1e-11 70.9 145 36.6
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.4e-10 70.1 136 37.5
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.4e-10 70.1 157 33.1
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.8e-10 69.7 134 35.8
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.3e-10 69.3 138 37.7
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.1e-10 68.9 152 34.2
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 3.1e-10 68.9 137 34.3
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 1.5e-09 66.6 134 35.1
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 1.5e-09 66.6 170 30.6
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 5.8e-09 64.7 170 29.4
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.7e-08 63.2 130 35.4
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 2.2e-08 62.8 136 30.9
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 2.2e-08 62.8 168 29.2
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.7e-08 62.0 138 32.6
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 4.9e-08 61.6 65 56.9
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 8.3e-08 60.8 134 29.9
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 2.4e-07 59.3 157 38.9
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 3.2e-07 58.9 135 35.6
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 4.1e-07 58.5 153 30.7
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 5.4e-07 58.2 121 37.2
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 1.2e-06 57.0 203 27.1
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.2e-06 57.0 145 31.0
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 3.5e-06 55.5 152 31.6
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 4.6e-06 55.1 145 31.7
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 6.0e-06 54.7 121 32.2
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 7.8e-06 54.3 140 33.6


User provided reference genes

Program Settings