Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 1.6e-86 322.8 165 100.0
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 3.5e-70 268.5 165 80.6
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 3.5e-70 268.5 163 78.5
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 4.5e-70 268.1 161 78.9
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 4.5e-70 268.1 165 80.0
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 2.9e-69 265.4 165 78.8
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 5.0e-69 264.6 158 81.6
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 2.5e-68 262.3 162 77.2
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 4.3e-68 261.5 163 77.3
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 5.6e-68 261.2 165 75.2
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 7.3e-68 260.8 163 77.3
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 1.2e-67 260.0 163 76.7
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 3.6e-67 258.5 162 72.8
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 4.7e-67 258.1 163 74.8
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 6.1e-67 257.7 162 74.7
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 2.3e-66 255.8 165 74.5
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 5.2e-66 254.6 163 73.0
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 1.2e-65 253.4 160 74.4
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 1.2e-65 253.4 163 73.6
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.6e-65 252.3 152 80.9
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.6e-65 252.3 162 75.9
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 3.4e-65 251.9 162 72.2
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 4.4e-65 251.5 161 77.0
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 5.7e-65 251.1 163 73.6
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 7.5e-65 250.8 160 73.8
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 1.7e-64 249.6 162 71.6
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.9e-64 248.8 162 71.0
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 4.9e-64 248.1 163 72.4
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 4.9e-64 248.1 162 69.8
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 6.4e-64 247.7 161 72.7
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 8.3e-64 247.3 159 74.8
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 8.3e-64 247.3 163 71.2
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 1.1e-63 246.9 163 71.8
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 1.4e-63 246.5 162 70.4
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 1.4e-63 246.5 162 70.4
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 2.4e-63 245.7 159 74.2
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.4e-63 245.7 162 69.1
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 3.2e-63 245.4 162 69.8
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 4.1e-63 245.0 155 76.8
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.2e-62 243.4 153 75.8
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 1.2e-62 243.4 155 74.8
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 1.6e-62 243.0 162 67.9
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 2.7e-62 242.3 163 69.3
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 3.5e-62 241.9 155 73.5
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 7.8e-62 240.7 160 73.8
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 1.0e-61 240.4 155 73.5
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 1.0e-61 240.4 161 67.7
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 1.0e-61 240.4 155 73.5
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.0e-61 240.4 162 68.5
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 1.7e-61 239.6 155 74.2
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 2.3e-61 239.2 163 68.7
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 2.3e-61 239.2 153 71.9
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 3.0e-61 238.8 162 66.7
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 3.9e-61 238.4 155 73.5
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 3.9e-61 238.4 155 73.5
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 3.9e-61 238.4 155 73.5
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 3.9e-61 238.4 155 73.5
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 5.0e-61 238.0 162 69.8
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 5.0e-61 238.0 165 67.9
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 5.0e-61 238.0 163 68.7
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 5.0e-61 238.0 163 69.9
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 6.6e-61 237.7 155 71.6
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 8.6e-61 237.3 155 72.9
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 8.6e-61 237.3 155 72.3
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 1.5e-60 236.5 164 71.3
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.5e-60 236.5 162 66.7
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 1.9e-60 236.1 162 66.0
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 1.9e-60 236.1 160 71.2
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 2.5e-60 235.7 163 70.6
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 3.3e-60 235.3 162 65.4
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 4.3e-60 235.0 161 67.7
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 2.1e-59 232.6 162 69.8
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 1.8e-58 229.6 163 67.5
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.3e-58 229.2 167 65.3
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 2.3e-58 229.2 150 67.3
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 3.1e-58 228.8 160 66.2
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 5.2e-58 228.0 162 67.9
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 5.2e-58 228.0 163 65.0
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 8.9e-58 227.3 162 67.3
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 1.2e-57 226.9 153 70.6
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 3.4e-57 225.3 157 70.7
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 9.8e-57 223.8 159 67.9
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 1.3e-56 223.4 166 62.7
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 1.3e-56 223.4 151 72.2
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 1.7e-56 223.0 163 64.4
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 3.7e-56 221.9 197 57.9
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.7e-56 221.9 143 73.4
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 6.4e-56 221.1 165 66.1
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 8.3e-56 220.7 154 68.8
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 1.1e-55 220.3 162 65.4
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 1.4e-55 219.9 163 65.6
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.9e-55 219.5 162 62.3
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 1.9e-55 219.5 145 70.3
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 3.2e-55 218.8 154 68.8
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 4.1e-55 218.4 164 60.4
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 1.0e-53 213.8 165 61.8
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 1.0e-53 213.8 160 60.0
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 1.0e-53 213.8 162 60.5
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 6.6e-53 211.1 162 63.0
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 8.6e-53 210.7 158 64.6
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 1.1e-52 210.3 166 60.8
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 1.5e-52 209.9 164 62.2
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.1e-51 206.1 152 62.5
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 3.6e-51 205.3 142 66.2
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 5.2e-50 201.4 167 58.1
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 5.2e-50 201.4 160 58.1
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 6.8e-50 201.1 162 59.3
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 2.0e-49 199.5 166 57.8
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 2.0e-49 199.5 164 56.7
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 3.2e-47 192.2 126 71.4
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 3.2e-47 192.2 163 57.1
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 5.4e-47 191.4 164 54.9
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 9.2e-47 190.7 154 63.0
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 3.5e-46 188.7 163 56.4
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 5.1e-45 184.9 161 57.1
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 6.2e-43 177.9 129 65.9
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 8.1e-43 177.6 125 69.6
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 2.3e-42 176.0 162 49.4
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 1.7e-40 169.9 111 73.0
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 2.2e-40 169.5 192 46.9
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 1.5e-36 156.8 168 50.6
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 9.6e-36 154.1 158 43.7
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 6.2e-35 151.4 171 45.6
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 5.8e-33 144.8 150 43.3
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 4.9e-32 141.7 167 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 9.3e-31 137.5 157 43.3
QL04p052584 Quercus lobata HOM05D005192 ORTHO05D006023 1.3e-29 133.7 89 75.3
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 2.3e-29 132.9 89 73.0
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 4.3e-28 128.6 161 42.9
PGSC0003DMG400013231 Solanum tuberosum HOM05D005192 ORTHO05D006023 2.8e-27 125.9 85 74.1
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 3.6e-27 125.6 75 73.3
Thhalv10011151m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 5.3e-26 121.7 77 76.6
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 5.8e-25 118.2 152 39.5
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 9.9e-25 117.5 151 40.4
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 1.1e-23 114.0 82 64.6
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.9e-21 105.5 173 31.2
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.9e-21 105.5 173 31.2
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.9e-21 105.5 173 31.2
MD07G1078400 Malus domestica HOM05D005192 ORTHO05D006023 1.4e-18 97.1 51 86.3
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 3.8e-16 89.0 146 38.4
HPP92_003408 Vanilla planifolia HOM05D005192 ORTHO05D006023 9.3e-15 84.3 148 31.8
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.1e-12 77.4 171 26.3
CBR_g41233 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-11 73.6 110 38.2
Os04g0601500 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 2.1e-11 73.2 142 30.3
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 1.4e-10 70.5 134 29.9
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 4.0e-10 68.9 134 29.9
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 6.9e-10 68.2 166 27.1
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.5e-09 67.0 134 27.6
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 2.0e-09 66.6 134 28.4
Zm00001eb430320 Zea mays HOM05D005192 ORTHO05D006023 2.0e-09 66.6 158 27.2
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 2.6e-09 66.2 134 27.6
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 3.4e-09 65.9 134 27.6
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 1.3e-08 63.9 134 26.9
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 1.3e-08 63.9 146 28.1
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 1.3e-08 63.9 134 26.9
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 3.8e-08 62.4 146 27.4
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 3.8e-08 62.4 146 27.4
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 4.9e-08 62.0 146 26.7
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 1.1e-07 60.8 123 29.3
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 1.1e-07 60.8 125 33.6
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 1.4e-07 60.5 129 31.0
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 1.9e-07 60.1 124 26.6
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 1.9e-07 60.1 126 27.8
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 1.9e-07 60.1 147 26.5
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 3.2e-07 59.3 159 26.4
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 3.2e-07 59.3 155 29.0
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 3.2e-07 59.3 129 27.9
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 4.2e-07 58.9 153 29.4
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 4.2e-07 58.9 156 23.7
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 5.5e-07 58.5 125 27.2
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 5.5e-07 58.5 123 25.2
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 7.1e-07 58.2 117 28.2
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 7.1e-07 58.2 124 29.8
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 9.3e-07 57.8 146 25.3
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.2e-06 57.4 124 25.8
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 1.6e-06 57.0 146 27.4
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 1.6e-06 57.0 146 27.4
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 1.6e-06 57.0 142 27.5
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 2.1e-06 56.6 150 29.3
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 2.7e-06 56.2 146 26.0
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 2.7e-06 56.2 150 23.3
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 3.5e-06 55.8 150 23.3


User provided reference genes

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