Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2536.1 1267 100.0
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2414.4 1266 94.5
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2357.4 1267 92.3
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2352.0 1267 91.9
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2351.2 1267 92.0
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2345.9 1267 91.9
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2333.9 1259 92.0
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2310.4 1267 90.8
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2286.5 1268 89.0
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2281.1 1271 88.7
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2280.4 1266 88.9
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2271.9 1266 88.7
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2267.3 1268 87.7
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2261.5 1264 88.0
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2254.6 1267 87.7
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2251.1 1260 88.2
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2244.2 1268 87.5
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2243.8 1267 87.4
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2242.2 1269 87.2
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2241.5 1267 87.4
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2236.5 1267 86.9
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2233.4 1270 86.5
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2229.5 1267 86.6
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2226.8 1267 86.3
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2226.4 1267 86.4
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2226.4 1271 86.2
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2223.7 1267 86.1
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2221.4 1270 85.8
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2218.0 1266 87.0
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2218.0 1268 85.9
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2216.4 1270 85.5
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2207.6 1268 85.3
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2199.5 1270 85.0
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2198.7 1268 84.9
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2195.6 1268 85.2
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2195.6 1263 85.6
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2192.5 1265 85.0
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2191.4 1272 84.5
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2191.0 1268 84.6
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2187.9 1272 83.9
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2187.5 1268 85.0
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2184.8 1267 84.3
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2182.5 1270 84.1
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2181.8 1267 84.1
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2181.0 1275 84.6
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2181.0 1271 83.9
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2181.0 1267 84.0
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2179.4 1267 84.1
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2178.7 1271 84.0
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2177.9 1238 86.4
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2177.9 1267 85.1
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2177.5 1267 84.8
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2177.1 1267 84.9
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2176.4 1267 83.9
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2174.8 1267 84.8
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2174.4 1266 84.1
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1267 83.7
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2173.3 1268 84.5
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2172.9 1265 83.8
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2171.7 1267 84.1
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2170.6 1267 83.6
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2170.2 1267 83.4
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1267 83.3
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2168.3 1267 83.1
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2167.9 1264 83.9
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2167.5 1265 83.6
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2166.7 1267 83.5
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2165.2 1267 83.0
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2164.0 1270 83.6
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2163.3 1267 83.7
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2163.3 1263 83.8
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1268 84.1
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2156.7 1206 88.1
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2155.6 1272 83.2
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2152.1 1272 82.4
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2150.9 1268 83.1
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1266 83.0
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2149.4 1249 84.9
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2149.0 1249 85.1
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2140.2 1268 82.4
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2139.8 1268 83.2
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2130.5 1265 82.5
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2127.4 1276 83.1
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2125.5 1263 82.7
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2124.0 1271 82.5
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2100.5 1271 81.2
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2098.9 1264 81.1
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2083.9 1266 80.0
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2082.4 1267 81.9
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2074.7 1272 79.3
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2067.4 1267 80.3
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2049.2 1267 80.3
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2026.1 1266 79.9
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1983.0 1263 77.7
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1973.4 1159 84.0
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1924.4 1268 74.4
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1909.8 1272 74.3
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1879.4 1278 72.5
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1860.1 1193 77.4
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1857.8 1245 73.8
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1849.3 1265 72.4
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1843.9 1072 83.2
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1838.5 1089 83.3
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1809.3 1268 72.9
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1804.3 1267 72.7
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1790.0 1130 79.5
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1661.4 966 83.1
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1560.8 1050 73.6
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1550.4 1323 61.2
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1407.9 813 84.3
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1391.3 1264 60.6
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1319.3 1331 53.6
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1298.9 1393 52.5
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1275.0 725 85.5
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1182.9 1042 61.9
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1132.1 809 72.6
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 1.5e-274 950.3 570 82.6
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.1e-260 903.3 503 89.3
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 4.5e-258 895.6 1243 41.4
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 2.4e-235 820.1 529 79.0
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-227 793.9 651 62.4
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 7.5e-205 718.8 455 79.8
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.6e-183 646.7 390 85.1
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 2.0e-133 481.5 359 68.2
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 1.1e-123 449.1 313 75.4
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 1.9e-107 395.2 271 75.6
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 6.8e-81 307.0 477 43.0
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 7.8e-69 266.9 169 76.9
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 2.5e-67 261.9 169 76.3
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 9.5e-67 260.0 169 75.7
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 6.8e-65 253.8 138 92.0
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 1.6e-61 242.7 234 57.3
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 7.3e-51 207.2 117 81.2
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.1e-41 175.3 91 91.2
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 2.0e-40 172.6 152 63.8
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 4.2e-38 164.9 182 54.9
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 2.4e-33 149.1 101 64.4
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 4.0e-25 121.7 104 59.6


User provided reference genes

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