Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.0e-248 862.1 467 100.0
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 6.4e-178 627.9 496 69.0
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.7e-154 550.1 458 65.7
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.9e-137 493.4 492 58.3
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 8.7e-135 484.6 494 56.9
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 8.7e-135 484.6 494 56.9
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.7e-133 479.2 494 56.9
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.5e-129 466.5 494 54.9
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 8.0e-112 408.3 449 53.9
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 1.5e-105 387.5 468 50.6
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.8e-100 370.5 513 45.0
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.2e-91 341.3 507 45.8
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 7.2e-89 332.0 493 45.8
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.2e-88 331.3 482 43.4
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 3.6e-88 329.7 479 43.6
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 2.4e-84 317.0 499 43.5
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 4.6e-83 312.8 494 42.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.9e-82 310.1 470 43.0
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 5.0e-82 309.3 552 40.2
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.1e-80 303.9 479 43.8
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 4.4e-78 296.2 545 39.8
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 5.8e-78 295.8 471 42.5
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 4.9e-77 292.7 472 42.2
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 6.4e-77 292.4 514 40.1
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 6.4e-77 292.4 507 41.2
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.1e-76 291.6 470 41.7
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.4e-76 290.4 470 42.3
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 2.0e-75 287.3 479 41.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.6e-75 286.2 500 39.4
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.6e-74 282.0 482 40.7
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 5.6e-73 279.3 470 42.1
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.2e-72 278.1 498 45.4
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.6e-72 277.7 525 37.9
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 8.1e-72 275.4 493 43.8
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 8.1e-72 275.4 504 42.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 8.9e-71 271.9 472 40.9
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 8.9e-71 271.9 480 41.9
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 2.2e-69 267.3 508 39.6
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.4e-68 264.6 477 40.9
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 2.4e-68 263.8 482 41.5
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 3.2e-68 263.5 474 39.0
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 4.1e-68 263.1 484 41.1
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 3.9e-66 256.5 497 37.4
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 5.1e-66 256.1 497 38.0
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 5.1e-66 256.1 507 37.5
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 5.6e-65 252.7 497 37.8
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.4e-63 248.1 482 38.2
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.4e-63 248.1 484 37.2
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 6.8e-63 245.7 499 37.3
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.3e-61 241.5 503 35.2
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.1e-60 238.4 497 39.4
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 7.1e-60 235.7 485 36.7
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 9.2e-60 235.3 509 36.1
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.2e-59 235.0 527 35.3
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.1e-59 234.2 523 34.6
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 6.0e-59 232.6 484 37.4
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.3e-58 231.5 540 34.3
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.7e-58 231.1 468 37.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 5.1e-58 229.6 540 33.9
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 5.1e-58 229.6 535 35.7
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 1.5e-57 228.0 415 39.3
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.6e-56 224.6 535 35.0
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.1e-56 224.2 557 34.3
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.1e-55 220.3 501 34.3
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.0e-55 219.9 517 35.4
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.2e-55 219.5 495 36.6
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.0e-54 217.6 593 33.1
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.9e-53 213.0 513 34.1
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 6.4e-53 212.6 526 33.7
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.6e-51 208.0 179 65.4
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.1e-51 207.6 513 32.6
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 3.5e-51 206.8 527 34.5
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 3.5e-51 206.8 554 33.9
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 4.6e-51 206.5 477 34.2
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 3.0e-50 203.8 529 33.8
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.6e-48 198.0 517 32.9
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 4.8e-48 196.4 497 34.2
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.1e-47 195.3 543 31.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 9.0e-47 192.2 180 58.9
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.3e-45 188.3 502 32.9
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.4e-44 184.9 524 34.5
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.3e-44 182.2 490 33.5
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 9.3e-44 182.2 540 32.2
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 5.1e-42 176.4 494 33.2
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 2.5e-41 174.1 526 30.2
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.3e-41 173.7 512 31.4
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.3e-40 171.8 521 31.3
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 6.2e-40 169.5 520 30.4
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.4e-39 168.3 167 56.9
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 2.4e-39 167.5 480 31.0
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 2.4e-39 167.5 466 30.7
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 3.1e-39 167.2 512 30.5
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 9.0e-39 165.6 521 30.3
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 9.0e-39 165.6 490 31.4
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 9.0e-39 165.6 490 31.4
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 5.8e-38 162.9 489 32.3
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 8.4e-37 159.1 217 46.1
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 6.0e-35 152.9 448 32.1
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.3e-34 151.8 536 31.2
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 6.7e-34 149.4 220 45.0
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 5.6e-33 146.4 482 31.5
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.3e-32 145.2 481 31.6
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 2.4e-31 141.0 512 29.3
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 9.0e-31 139.0 222 43.7
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.3e-29 135.2 507 28.8
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 8.4e-29 132.5 527 26.2
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.6e-27 126.7 352 31.8
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 4.6e-27 126.7 525 27.4
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.3e-26 124.4 468 28.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 2.1e-24 117.9 436 28.0
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 2.6e-22 110.9 150 40.7
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 1.1e-20 105.5 99 55.6
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.4e-20 105.1 170 38.2
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 3.2e-20 104.0 98 55.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 4.2e-20 103.6 170 42.4
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 9.3e-20 102.4 71 70.4
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 2.5e-17 94.4 127 46.5
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.1e-12 79.0 83 49.4
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.2e-11 75.5 79 43.0
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 1.2e-11 75.5 314 26.8
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.4e-10 72.0 246 28.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.8e-10 71.6 78 41.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.3e-10 71.2 82 41.5
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 3.9e-10 70.5 171 29.2
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 8.8e-10 69.3 77 41.6
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.5e-09 67.8 221 26.7
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 3.3e-09 67.4 98 35.7
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.3e-09 67.0 99 37.4
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 4.3e-09 67.0 131 31.3
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 5.7e-09 66.6 126 31.0
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 7.4e-09 66.2 119 36.1
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 7.4e-09 66.2 124 31.5
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 9.7e-09 65.9 79 36.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 9.7e-09 65.9 148 30.4
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.7e-08 65.1 80 41.2
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.8e-08 64.3 101 35.6
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.8e-08 64.3 75 40.0
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.8e-08 64.3 88 36.4
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.8e-08 63.5 75 40.0
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 6.3e-08 63.2 80 37.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 6.3e-08 63.2 79 38.0
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 6.3e-08 63.2 77 39.0
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 6.3e-08 63.2 72 44.4
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 8.2e-08 62.8 101 37.6
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 8.2e-08 62.8 77 36.4
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.1e-07 62.4 53 58.5
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 1.4e-07 62.0 248 27.0
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.4e-07 62.0 75 38.7
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.4e-07 62.0 61 45.9
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.4e-07 62.0 124 29.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 1.8e-07 61.6 79 38.0
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.8e-07 61.6 72 38.9
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 1.8e-07 61.6 70 44.3
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 3.1e-07 60.8 75 40.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 3.1e-07 60.8 54 51.9
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 4.1e-07 60.5 73 47.9
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 4.1e-07 60.5 85 31.8
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 5.3e-07 60.1 151 28.5
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 5.3e-07 60.1 78 38.5
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 5.3e-07 60.1 86 34.9
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 5.3e-07 60.1 78 42.3
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 6.9e-07 59.7 145 30.3
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 6.9e-07 59.7 78 37.2
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 6.9e-07 59.7 217 24.4
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.2e-06 58.9 54 50.0
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.2e-06 58.9 119 31.1
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 1.5e-06 58.5 150 26.0
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.5e-06 58.5 81 38.3
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 2.0e-06 58.2 85 36.5
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.0e-06 58.2 80 32.5
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 2.6e-06 57.8 212 25.5
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 3.4e-06 57.4 238 23.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 3.4e-06 57.4 66 37.9
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 3.4e-06 57.4 134 27.6
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 4.5e-06 57.0 81 37.0
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 4.5e-06 57.0 85 36.5
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 4.5e-06 57.0 66 43.9
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 4.5e-06 57.0 76 39.5
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 5.9e-06 56.6 52 44.2


User provided reference genes

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