Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.0e-60 236.5 113 100.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-24 115.9 115 61.7
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.6e-24 115.5 116 59.5
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.6e-24 115.5 116 59.5
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.6e-24 115.5 116 59.5
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.9e-23 112.1 115 60.9
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.1e-22 110.2 117 59.0
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-20 103.2 115 50.4
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.7e-20 102.8 131 45.8
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.9e-20 101.7 100 60.0
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-19 99.8 102 59.8
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.5e-19 99.8 131 45.0
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-19 99.0 102 58.8
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 2.3e-17 92.4 98 51.0
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 3.1e-17 92.0 119 46.2
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.0e-17 91.7 133 45.1
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.4e-16 88.2 118 44.1
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 7.5e-16 87.4 117 40.2
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 9.8e-16 87.0 128 42.2
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 9.8e-16 87.0 116 42.2
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 9.8e-16 87.0 121 42.1
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.3e-15 86.7 126 42.1
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 85 58.8
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 2.2e-15 85.9 133 42.1
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.2e-15 85.9 114 45.6
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 6.4e-15 84.3 107 47.7
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 6.4e-15 84.3 116 40.5
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 6.4e-15 84.3 115 45.2
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 8.3e-15 84.0 116 46.6
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 8.3e-15 84.0 74 58.1
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.4e-14 83.2 130 39.2
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.4e-14 83.2 118 44.1
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.9e-14 82.8 122 45.1
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.4e-14 82.4 122 44.3
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 3.2e-14 82.0 126 43.7
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 4.1e-14 81.6 115 44.3
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 5.4e-14 81.3 117 41.0
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 7.0e-14 80.9 99 48.5
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 7.0e-14 80.9 125 41.6
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 9.2e-14 80.5 97 47.4
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.2e-14 80.5 101 46.5
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.2e-14 80.5 101 46.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.2e-13 80.1 120 44.2
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-13 79.3 71 57.7
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-13 79.3 76 57.9
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.7e-13 79.0 116 41.4
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.7e-13 79.0 72 58.3
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 3.5e-13 78.6 74 59.5
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.6e-13 78.2 109 43.1
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.6e-13 78.2 109 43.1
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.6e-13 78.2 109 43.1
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 6.0e-13 77.8 102 44.1
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 7.8e-13 77.4 72 56.9
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 7.8e-13 77.4 122 41.0
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 7.8e-13 77.4 82 52.4
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 7.8e-13 77.4 72 56.9
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.0e-12 77.0 123 40.7
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.3e-12 76.6 108 47.2
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.7e-12 76.3 113 38.1
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.3e-12 75.9 72 55.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-12 75.5 120 40.8
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 6.6e-12 74.3 72 55.6
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.6e-12 74.3 67 56.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 6.6e-12 74.3 119 42.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 8.6e-12 73.9 127 40.9
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.6e-12 73.9 112 39.3
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.6e-12 73.9 119 40.3
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 8.6e-12 73.9 72 56.9
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-11 73.6 93 48.4
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.5e-11 73.2 121 42.1
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.5e-11 73.2 70 54.3
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.9e-11 72.8 97 43.3
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.9e-11 72.8 72 54.2
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.9e-11 72.8 111 44.1
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.5e-11 72.4 53 67.9
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 2.5e-11 72.4 74 55.4
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 4.3e-11 71.6 72 51.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 5.6e-11 71.2 60 55.0
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.3e-11 70.9 105 42.9
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 9.5e-11 70.5 107 41.1
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-10 70.1 79 50.6
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.6e-10 69.7 72 54.2
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.1e-10 69.3 114 38.6
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.8e-10 68.9 78 46.2
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.8e-10 68.9 57 61.4
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.7e-10 68.2 71 46.5
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 6.2e-10 67.8 92 45.7
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 6.2e-10 67.8 77 50.6
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 6.2e-10 67.8 102 42.2
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 8.1e-10 67.4 56 57.1
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-09 67.0 65 53.8
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.8e-09 66.2 66 53.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.8e-09 66.2 57 57.9
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.1e-09 65.5 80 42.5
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.1e-09 65.5 75 49.3
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.0e-09 65.1 102 38.2
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 6.8e-09 64.3 75 49.3
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 6.8e-09 64.3 72 51.4
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 8.9e-09 63.9 67 55.2
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 8.9e-09 63.9 73 46.6
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 1.5e-08 63.2 84 41.7
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 1.5e-08 63.2 81 50.6
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 2.0e-08 62.8 74 51.4
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.6e-08 62.4 64 48.4
Sc25g0001350 Simmondsia chinensis HOM05D005304 ORTHO05D004438 2.6e-08 62.4 66 51.5
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.4e-08 62.0 54 61.1
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 63 50.8
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 63 50.8
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.4e-08 62.0 63 50.8
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.4e-08 62.0 102 39.2
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 80 41.2
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 4.4e-08 61.6 98 39.8
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 5.8e-08 61.2 98 38.8
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 7.5e-08 60.8 55 56.4
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 7.5e-08 60.8 96 40.6
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.9e-08 60.5 74 44.6
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 9.9e-08 60.5 74 44.6
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 9.9e-08 60.5 96 39.6
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.3e-07 60.1 71 46.5
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 1.3e-07 60.1 78 42.3
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.7e-07 59.7 98 37.8
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.7e-07 59.7 95 38.9
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 1.7e-07 59.7 127 33.9
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 1.7e-07 59.7 87 40.2
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 2.2e-07 59.3 70 47.1
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 2.9e-07 58.9 95 40.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-07 58.9 54 48.1
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.9e-07 58.9 102 35.3
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.9e-07 58.2 56 58.9
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 6.4e-07 57.8 91 41.8
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 8.3e-07 57.4 62 51.6
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 8.3e-07 57.4 85 37.6
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 1.1e-06 57.0 52 51.9
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.1e-06 57.0 61 50.8
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.9e-06 56.2 72 45.8
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 1.9e-06 56.2 65 47.7
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 2.4e-06 55.8 93 39.8
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 2.4e-06 55.8 93 40.9
MD12G1140600 Malus domestica HOM05D005967 ORTHO05D005174 2.4e-06 55.8 84 41.7
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 4.1e-06 55.1 46 58.7
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 4.1e-06 55.1 61 50.8
CSS0000743 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.1e-06 55.1 70 44.3
CSS0018861 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.1e-06 55.1 70 44.3
CSS0040409 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.1e-06 55.1 70 44.3
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 4.1e-06 55.1 74 43.2
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 4.1e-06 55.1 58 50.0
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 4.1e-06 55.1 61 42.6
ATR0998G003 Amborella trichopoda HOM05D018057 ORTHO05D004438 5.4e-06 54.7 68 41.2
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 5.4e-06 54.7 100 40.0
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 5.4e-06 54.7 78 37.2
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.4e-06 54.7 54 50.0


User provided reference genes

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