Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1414.1 733 100.0
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1343.6 735 95.6
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1251.1 733 88.0
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1248.8 733 87.7
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1248.4 733 87.7
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1247.3 733 87.9
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1246.1 733 87.6
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1244.2 733 87.4
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1244.2 733 87.6
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1239.9 732 88.9
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1204.9 736 84.6
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1203.3 729 85.5
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1203.3 736 84.4
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1201.8 736 84.4
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1196.0 736 84.1
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1194.9 731 83.9
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1194.1 731 83.2
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1193.7 723 85.1
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1192.6 731 82.9
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1185.2 727 83.6
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1184.1 726 83.7
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1182.9 730 82.6
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1181.8 733 83.5
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1180.6 734 82.6
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1179.9 734 82.7
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1178.7 729 82.9
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1177.9 729 82.6
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1176.8 726 83.6
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1175.2 732 82.5
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1174.8 731 83.0
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1171.8 728 82.4
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1171.4 729 81.8
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1171.4 727 82.4
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1169.5 731 82.2
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1165.2 735 81.2
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1164.1 726 81.7
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1162.5 729 81.5
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 734 79.8
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 734 79.8
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1159.8 735 80.3
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1157.9 734 79.6
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1157.9 734 79.6
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1157.5 729 81.9
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1156.7 727 81.3
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1155.6 734 79.3
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1155.2 734 79.6
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1154.8 727 80.5
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1153.7 734 79.6
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1153.3 732 80.3
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1152.9 727 81.0
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1151.7 729 80.7
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1151.0 741 80.7
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1150.2 729 81.3
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1150.2 729 80.5
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1150.2 727 81.0
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1148.7 726 81.3
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1147.9 727 80.6
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1146.3 727 80.2
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1146.3 727 80.5
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1145.2 733 79.0
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1143.6 727 80.5
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1141.7 733 78.7
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 732 79.0
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1140.9 728 80.9
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1140.6 729 81.1
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1137.5 733 78.6
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1135.6 733 78.4
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1135.2 730 78.8
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 728 79.4
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1131.3 727 79.5
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1124.8 730 77.3
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1122.1 709 79.5
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1120.5 736 78.0
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1116.7 726 78.7
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1112.8 731 77.7
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1111.3 732 76.6
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1111.3 733 77.9
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1109.0 726 76.6
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1107.0 731 77.3
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1106.3 751 75.5
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 0.0e+00 1106.3 751 75.5
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1105.9 731 77.2
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1104.4 726 77.7
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1103.6 731 77.0
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1102.4 704 79.8
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1102.4 727 77.2
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1099.7 727 76.9
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1099.3 726 77.4
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1098.2 727 76.8
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1097.0 727 76.8
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1090.1 729 77.9
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 0.0e+00 1089.7 733 76.0
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1084.7 710 77.7
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 2.9e-310 1068.1 726 74.1
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 6.5e-310 1067.0 729 76.0
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 1.1e-309 1066.2 734 73.0
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.9e-309 1065.4 726 73.4
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 7.4e-306 1053.5 728 74.9
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 6.9e-304 1047.0 673 79.0
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 3.9e-299 1031.2 732 71.0
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.0e-294 1016.5 739 69.4
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 2.9e-294 1015.0 762 69.7
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 8.5e-294 1013.4 728 71.7
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 1.6e-292 1009.2 727 72.5
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 7.9e-292 1006.9 709 73.6
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.4e-291 1006.1 739 68.6
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.0e-286 989.9 665 74.7
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 7.2e-285 983.8 695 72.2
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 1.1e-282 976.5 730 70.0
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 2.2e-281 972.2 663 73.5
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.7e-276 955.3 726 67.9
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 1.7e-265 919.5 728 67.7
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 7.3e-261 904.0 521 91.6
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 3.5e-255 885.2 728 61.3
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 3.7e-249 865.1 738 60.4
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 1.1e-248 863.6 729 60.6
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 2.9e-241 839.0 733 62.2
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 6.0e-239 831.2 561 76.6
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 8.6e-238 827.4 729 65.4
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.4e-227 793.5 641 63.8
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 1.1e-221 773.9 434 91.7
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 1.6e-212 743.4 867 47.8
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 4.9e-209 731.9 549 69.4
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.2e-186 657.5 386 86.8
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 1.0e-177 627.9 414 76.8
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 1.1e-171 607.8 330 94.2
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 2.7e-162 576.6 394 75.9
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 1.0e-161 574.7 526 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 1.1e-160 571.2 535 56.4
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 4.5e-154 549.3 649 49.0
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 2.9e-153 546.6 529 56.7
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 8.6e-145 518.5 726 43.4
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 9.5e-144 515.0 358 74.0
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 3.6e-143 513.1 495 56.6
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 2.9e-132 476.9 328 75.9
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 2.0e-130 470.7 738 37.4
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 4.9e-124 449.5 835 34.3
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.7e-121 441.0 305 75.1
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 5.8e-117 426.0 495 53.3
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 3.8e-116 423.3 281 80.1
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 7.8e-114 415.6 274 78.5
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 7.3e-112 409.1 270 79.3
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 2.8e-111 407.1 270 78.9
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 1.5e-109 401.4 309 66.3
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 6.6e-105 386.0 210 90.0
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 7.1e-99 365.9 237 79.7
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.2e-98 365.2 396 54.5
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 2.3e-97 360.9 234 79.9
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 2.3e-97 360.9 234 79.9
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 7.9e-90 335.9 213 82.2
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 2.1e-87 327.8 190 84.7
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 8.2e-87 325.9 183 86.9
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 3.7e-55 220.7 150 80.7
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 2.5e-51 208.0 218 58.3
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 2.3e-49 201.4 123 78.9
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 4.0e-49 200.7 187 57.2
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 1.1e-46 192.6 148 65.5
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.2e-45 189.1 120 84.2
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 2.8e-39 167.9 128 66.4
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 6.8e-33 146.7 143 62.9
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 1.5e-32 145.6 667 22.9
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 3.4e-32 144.4 108 65.7
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.4e-30 138.3 96 71.9
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.5e-27 128.3 78 87.2
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 7.3e-27 126.7 261 41.0
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 8.3e-23 113.2 71 80.3
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 4.6e-21 107.5 81 74.1
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 4.6e-21 107.5 81 74.1
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 1.9e-19 102.1 98 60.2
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 4.3e-19 100.9 73 71.2
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 5.2e-17 94.0 68 70.6
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 1.5e-16 92.4 86 57.0
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 5.4e-14 84.0 57 73.7
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 9.2e-14 83.2 57 73.7
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 3.5e-13 81.3 54 74.1
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 2.0e-08 65.5 44 75.0
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 3.4e-08 64.7 52 61.5
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 3.4e-08 64.7 52 61.5
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 3.4e-08 64.7 52 61.5
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 9.9e-08 63.2 52 59.6


User provided reference genes

Program Settings