Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1541.9 775 100.0
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1330.1 769 87.0
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1329.7 769 86.9
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1329.3 768 87.2
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1323.1 768 86.7
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1322.0 769 86.3
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1320.8 766 86.7
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1314.7 797 83.8
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1269.6 769 83.7
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1245.3 770 81.0
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1243.0 771 79.5
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1236.1 769 80.6
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1236.1 768 79.6
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1232.6 768 79.8
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1213.0 767 79.4
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1212.6 773 78.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1212.6 766 78.5
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1209.5 769 79.1
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1206.4 765 77.5
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1203.0 765 77.9
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1201.8 766 77.7
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1199.9 765 77.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 767 77.4
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1193.3 765 79.0
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 767 77.6
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1186.8 773 76.7
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1183.7 768 76.0
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1177.9 768 77.1
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1176.8 768 76.7
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 768 76.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1174.8 768 76.6
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1174.1 776 75.9
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 775 75.7
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1168.7 765 76.1
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1161.7 783 74.2
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1160.6 742 77.1
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1154.8 770 75.1
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 769 75.0
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1142.1 763 75.4
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1142.1 731 78.2
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1139.0 772 72.8
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 763 73.7
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1135.9 771 72.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1135.2 770 74.4
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1130.2 770 71.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1129.4 781 73.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1129.0 770 73.6
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1124.8 772 73.7
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1123.6 765 73.7
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1122.5 766 73.0
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1121.3 767 73.0
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1121.3 845 68.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1118.2 774 72.4
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1112.8 770 73.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 766 71.9
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 775 72.3
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1110.5 769 73.0
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1110.1 771 72.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1109.0 767 72.6
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 872 67.8
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1107.4 765 72.8
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1104.0 765 71.8
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1099.3 768 71.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 701 78.3
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1097.4 768 71.2
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1097.0 774 70.7
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1096.6 765 71.0
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1096.6 767 72.0
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 898 65.8
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1094.0 768 71.0
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 763 70.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1089.7 781 69.7
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1089.3 766 71.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1088.9 749 73.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 763 71.0
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1087.4 764 71.1
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 768 71.7
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 768 71.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 852 66.8
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 665 81.2
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.3e-312 1073.9 739 72.7
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 4.8e-311 1070.8 785 70.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 4.4e-309 1064.3 774 69.4
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 2.9e-308 1061.6 768 69.0
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 2.9e-308 1061.6 768 69.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.3e-305 1052.0 765 69.2
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 3.0e-305 1051.6 782 69.3
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 5.1e-305 1050.8 799 66.8
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 2.8e-303 1045.0 821 66.7
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 5.8e-301 1037.3 771 68.4
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 9.9e-301 1036.6 741 70.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.9e-299 1032.3 764 67.4
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.9e-299 1032.3 766 67.2
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 4.6e-298 1027.7 771 67.6
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 7.8e-298 1026.9 767 67.0
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 7.8e-298 1026.9 767 67.0
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 5.6e-296 1020.8 766 66.1
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.8e-295 1018.5 774 67.6
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 8.1e-295 1016.9 765 67.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 3.1e-294 1015.0 765 67.1
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 2.0e-293 1012.3 718 69.9
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 3.4e-293 1011.5 765 66.9
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 5.8e-293 1010.7 762 66.8
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.2e-292 1008.8 764 66.4
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.6e-282 976.1 720 67.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 6.5e-276 954.1 665 70.1
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 6.7e-273 944.1 736 65.6
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 9.7e-272 940.3 764 63.2
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.3e-268 929.9 771 62.1
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.1e-258 896.0 667 67.5
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.6e-258 895.2 776 59.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.8e-255 885.6 767 61.3
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 9.1e-254 880.6 767 61.4
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.1e-248 863.6 533 80.9
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 8.2e-239 830.9 607 70.0
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 9.4e-235 817.4 776 59.0
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.7e-221 772.7 766 55.2
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.3e-219 765.4 541 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 8.0e-218 761.1 808 51.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.2e-197 694.1 785 48.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 5.1e-196 688.7 785 48.3
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 8.1e-194 681.4 793 47.5
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.4e-184 649.4 755 50.2
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.9e-183 646.4 388 81.2
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.9e-171 607.1 467 66.0
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.8e-164 583.9 456 65.6
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 7.6e-160 568.5 368 77.2
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 7.6e-160 568.5 384 76.0
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.9e-159 565.8 465 62.6
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.0e-152 543.9 493 60.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 5.1e-148 529.3 765 42.0
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 6.5e-143 512.3 470 58.1
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.8e-138 496.9 300 81.7
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.8e-124 451.1 384 59.9
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.8e-121 441.0 673 42.2
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 4.1e-121 439.9 364 65.1
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.6e-117 426.8 288 74.7
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 8.9e-108 395.6 391 54.5
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 9.8e-99 365.5 228 75.9
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 3.5e-96 357.1 221 78.3
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.1e-94 352.1 229 76.9
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 7.3e-94 349.4 291 62.9
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.8e-92 344.7 227 72.7
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.1e-87 326.6 204 76.5
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 5.6e-86 323.2 249 67.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.7e-71 275.0 182 72.0
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.9e-66 257.7 223 64.1
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 7.3e-62 243.0 188 63.8
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 6.2e-61 240.0 155 74.8
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 3.7e-53 214.2 268 49.6
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.8e-52 211.8 131 79.4
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.4e-44 185.7 493 30.0
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 7.9e-32 143.3 109 70.6
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 7.9e-32 143.3 128 64.1
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 6.7e-31 140.2 114 63.2
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 5.7e-30 137.1 72 94.4
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 1.2e-19 102.8 75 72.0
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.2e-17 93.6 64 70.3
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 9.7e-14 83.2 92 48.9
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 3.2e-09 68.2 60 58.3
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 1.2e-06 59.7 35 74.3
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 1.2e-06 59.7 35 74.3
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 1.2e-06 59.7 35 74.3


User provided reference genes

Program Settings