Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 3.0e-51 204.9 104 100.0
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 3.0e-51 204.9 104 100.0
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 3.0e-51 204.9 104 100.0
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 1.1e-50 203.0 104 98.1
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.5e-50 202.6 103 98.1
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 3.3e-50 201.4 104 97.1
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.1e-44 182.2 103 86.4
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 2.1e-44 182.2 104 86.5
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 2.1e-44 182.2 104 87.5
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 7.9e-44 180.3 103 85.4
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 7.9e-44 180.3 103 85.4
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 3.0e-43 178.3 104 84.6
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 1.3e-38 162.9 102 75.5
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.2e-37 157.9 92 82.6
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 1.2e-36 156.4 99 78.8
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 2.7e-36 155.2 104 74.0
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 6.0e-36 154.1 104 70.2
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 7.9e-36 153.7 99 78.8
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.0e-35 153.3 99 76.8
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 2.3e-35 152.1 99 75.8
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 3.0e-35 151.8 99 75.8
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 3.9e-35 151.4 102 71.6
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 5.1e-35 151.0 98 73.5
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 6.7e-35 150.6 100 77.0
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 1.1e-34 149.8 100 75.0
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 1.5e-34 149.4 102 69.6
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 1.5e-34 149.4 104 67.3
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 1.5e-34 149.4 99 73.7
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.5e-34 148.7 102 70.6
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 2.5e-34 148.7 87 85.1
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.5e-34 148.7 87 85.1
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 3.3e-34 148.3 104 66.3
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 5.6e-34 147.5 96 74.0
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 5.6e-34 147.5 95 73.7
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 5.6e-34 147.5 95 73.7
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 9.6e-34 146.7 102 69.6
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.3e-33 146.4 104 71.2
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 1.6e-33 146.0 96 72.9
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 2.1e-33 145.6 96 72.9
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 2.1e-33 145.6 96 72.9
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 2.1e-33 145.6 96 72.9
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.1e-33 145.6 96 74.0
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 2.1e-33 145.6 99 74.7
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 2.1e-33 145.6 99 74.7
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 2.1e-33 145.6 99 74.7
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 2.8e-33 145.2 99 71.7
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 3.7e-33 144.8 104 72.1
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 3.7e-33 144.8 104 72.1
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 6.2e-33 144.1 96 69.8
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 6.2e-33 144.1 99 68.7
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 6.2e-33 144.1 99 68.7
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 6.2e-33 144.1 103 68.0
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 6.2e-33 144.1 103 67.0
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 8.1e-33 143.7 96 70.8
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 8.1e-33 143.7 99 73.7
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 1.1e-32 143.3 96 70.8
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.1e-32 143.3 104 67.3
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.4e-32 142.9 104 67.3
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 1.4e-32 142.9 104 67.3
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.4e-32 142.9 96 71.9
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.4e-32 142.9 96 71.9
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 1.4e-32 142.9 96 71.9
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 1.8e-32 142.5 96 70.8
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 3.1e-32 141.7 102 69.6
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 3.1e-32 141.7 104 67.3
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 4.0e-32 141.4 102 65.7
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 5.3e-32 141.0 97 71.1
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 1.2e-31 139.8 99 71.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 3.4e-31 138.3 99 69.7
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 3.4e-31 138.3 99 68.7
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.8e-31 137.5 99 67.7
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 5.8e-31 137.5 99 67.7
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 1.3e-30 136.3 99 67.7
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 6.5e-30 134.0 103 64.1
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 2.5e-29 132.1 99 68.7
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 4.2e-29 131.3 104 64.4
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 4.2e-29 131.3 88 75.0
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 4.2e-29 131.3 85 72.9
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 9.3e-29 130.2 87 73.6
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 1.2e-28 129.8 86 74.4
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 1.2e-28 129.8 87 74.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.3e-27 125.6 99 64.6
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 6.7e-27 124.0 101 60.4
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.9e-26 122.5 87 69.0
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 2.7e-20 102.1 70 71.4
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 4.6e-20 101.3 99 55.6
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.0e-19 100.1 75 66.7
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 1.8e-19 99.4 62 75.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 3.9e-19 98.2 70 70.0
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 1.1e-18 96.7 98 53.1
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 9.7e-18 93.6 63 73.0
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 2.8e-17 92.0 59 74.6
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 1.4e-16 89.7 63 71.4
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 1.4e-16 89.7 63 71.4
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.8e-16 89.4 62 69.4
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 5.3e-16 87.8 73 64.4
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.3e-16 87.8 62 74.2
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.2e-15 86.7 64 68.8
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 5.9e-15 84.3 63 65.1
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 7.7e-15 84.0 97 44.3
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.0e-14 81.3 53 73.6
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 6.1e-12 74.3 58 63.8
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 5.1e-11 71.2 53 66.0
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.3e-10 68.6 49 69.4
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 4.8e-09 64.7 95 43.2
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 1.8e-08 62.8 38 78.9
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 4.1e-08 61.6 40 67.5
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 5.3e-08 61.2 71 49.3
Sabra16G0250800 Salix brachista HOM05D007153 ORTHO05D009081 5.3e-08 61.2 44 61.4
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 3.4e-07 58.5 39 66.7
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 5.9e-07 57.8 95 44.2
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 7.7e-07 57.4 95 40.0
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.3e-06 56.6 95 40.0
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.3e-06 56.6 95 40.0
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 1.7e-06 56.2 95 38.9
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.2e-06 55.8 95 42.1
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.2e-06 55.8 95 42.1
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.2e-06 55.8 95 42.1
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 2.2e-06 55.8 95 42.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 95 41.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 95 41.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 2.9e-06 55.5 95 41.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 2.9e-06 55.5 95 38.9
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 2.9e-06 55.5 95 40.0
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 37.9
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 37.9
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 6.5e-06 54.3 95 37.9
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 6.5e-06 54.3 95 37.9


User provided reference genes

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