Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 3.9e-71 271.6 158 100.0
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 4.1e-36 155.2 170 64.1
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 7.7e-35 151.0 162 59.9
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 8.6e-34 147.5 162 64.2
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 1.0e-31 140.6 170 63.5
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 1.8e-28 129.8 166 55.4
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 1.8e-28 129.8 175 59.4
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.7e-26 123.2 168 56.0
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 5.6e-25 118.2 149 53.0
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 2.1e-24 116.3 107 64.5
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 3.6e-24 115.5 123 58.5
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.3e-23 112.8 115 60.9
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 4.0e-23 112.1 148 52.7
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 4.0e-23 112.1 172 49.4
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 4.0e-23 112.1 162 52.5
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 8.9e-23 110.9 160 48.8
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 4.4e-22 108.6 82 75.6
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 5.8e-22 108.2 167 50.3
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.3e-21 107.1 77 77.9
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.7e-21 106.7 164 48.2
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 1.7e-21 106.7 168 49.4
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 1.7e-21 106.7 168 49.4
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 2.9e-21 105.9 162 46.9
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 3.7e-21 105.5 161 49.1
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 3.7e-21 105.5 122 59.8
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 4.9e-21 105.1 171 48.5
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 8.3e-21 104.4 163 50.3
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 1.4e-20 103.6 172 45.9
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.4e-20 103.6 157 46.5
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 3.2e-20 102.4 78 73.1
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 4.1e-20 102.1 159 49.1
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 7.0e-20 101.3 171 46.2
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 9.2e-20 100.9 84 73.8
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 2.0e-19 99.8 166 47.0
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 2.7e-19 99.4 76 73.7
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 6.0e-19 98.2 171 45.6
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.0e-18 97.4 164 50.0
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.0e-18 97.4 122 52.5
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 1.3e-18 97.1 146 46.6
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.3e-18 96.3 112 54.5
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 3.0e-18 95.9 80 75.0
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 3.9e-18 95.5 112 58.0
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 3.9e-18 95.5 129 49.6
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 5.0e-18 95.1 74 74.3
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 6.6e-18 94.7 158 43.0
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 6.6e-18 94.7 140 46.4
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 8.6e-18 94.4 165 49.7
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 1.9e-17 93.2 78 69.2
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 2.5e-17 92.8 83 67.5
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 2.5e-17 92.8 75 73.3
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 3.3e-17 92.4 74 73.0
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 5.6e-17 91.7 169 49.7
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 9.5e-17 90.9 151 45.7
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.6e-16 90.1 155 43.2
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 2.1e-16 89.7 151 47.7
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 2.8e-16 89.4 146 46.6
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 2.8e-16 89.4 157 48.4
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 2.8e-16 89.4 65 70.8
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 3.6e-16 89.0 62 75.8
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 4.7e-16 88.6 156 46.2
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 4.7e-16 88.6 159 45.3
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 4.7e-16 88.6 68 76.5
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 4.7e-16 88.6 68 76.5
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 6.2e-16 88.2 160 43.8
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 6.2e-16 88.2 74 74.3
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 8.1e-16 87.8 74 67.6
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 1.4e-15 87.0 71 64.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 3.1e-15 85.9 176 46.0
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 5.8e-14 81.6 150 48.7
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.3e-13 80.5 116 49.1
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 1.3e-13 80.5 66 68.2
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 2.9e-13 79.3 79 62.0
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 6.4e-13 78.2 59 74.6
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 5.4e-12 75.1 89 56.2
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 5.4e-12 75.1 80 58.8
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 7.1e-12 74.7 66 66.7
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 7.1e-12 74.7 89 51.7
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 9.2e-12 74.3 80 56.2
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.2e-11 73.9 89 57.3
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.1e-11 73.2 126 44.4
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 3.5e-11 72.4 96 44.8
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.6e-11 72.0 66 69.7
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 1.0e-10 70.9 66 68.2
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 1.0e-10 70.9 66 68.2
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 1.0e-10 70.9 66 68.2
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 3.0e-10 69.3 49 67.3
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 5.1e-10 68.6 83 50.6
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 1.5e-09 67.0 68 58.8
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 2.5e-09 66.2 80 53.8
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 9.5e-09 64.3 70 57.1
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-07 60.5 45 64.4
DCAR_006372 Daucus carota HOM05D007680 ORTHO05D009702 4.0e-07 58.9 115 36.5


User provided reference genes

Program Settings