Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G084400 Prunus persica HOM05D002310 ORTHO05D002326 0.0e+00 1578.9 775 100.0
MD07G1067200 Malus domestica HOM05D002310 ORTHO05D002326 0.0e+00 1127.1 774 73.0
MD02G1254600 Malus domestica HOM05D002310 ORTHO05D002326 8.1e-303 1043.5 774 69.6
RcHm_v2.0_Chr1g0332961 Rosa chinensis HOM05D002310 ORTHO05D002326 2.3e-265 919.1 793 62.3
FAN03G0072 Fragaria x ananassa HOM05D002310 ORTHO05D002326 2.5e-251 872.5 792 59.7
FAN01G2365 Fragaria x ananassa HOM05D002310 ORTHO05D002326 5.2e-249 864.8 791 59.3
FAN06G0045 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.1e-248 863.6 791 59.2
FAN10G0348 Fragaria x ananassa HOM05D002310 ORTHO05D002326 2.2e-247 859.4 791 59.2
FvH4_7g05850 Fragaria vesca HOM05D002310 ORTHO05D002326 1.2e-245 853.6 791 58.8
Cfa011244 Carpinus fangiana HOM05D002310 ORTHO05D002326 5.3e-185 652.1 802 48.6
Haze_02585 Corylus avellana HOM05D002310 ORTHO05D002326 3.8e-183 646.0 799 48.4
QL04p042592 Quercus lobata HOM05D002310 ORTHO05D002326 4.3e-179 632.5 808 47.9
CiPaw.14G029600 Carya illinoinensis HOM05D002310 ORTHO05D002326 4.9e-167 592.4 795 45.2
CiPaw.13G037400 Carya illinoinensis HOM05D002310 ORTHO05D002326 3.1e-161 573.2 798 44.4
Dinv20806 Davidia involucrata HOM05D002310 ORTHO05D002326 2.2e-135 487.3 797 40.0
Potri.008G024500 Populus trichocarpa HOM05D002310 ORTHO05D002326 1.9e-134 484.2 809 38.6
Potri.010G235700 Populus trichocarpa HOM05D002310 ORTHO05D002326 7.4e-131 472.2 810 39.4
Sabra10G0182800 Salix brachista HOM05D002310 ORTHO05D002326 4.2e-126 456.4 809 38.3
Sabra08G0016500 Salix brachista HOM05D002310 ORTHO05D002326 5.5e-126 456.1 809 38.1
Atru.chr12.977 Acer truncatum HOM05D002310 ORTHO05D002326 1.2e-125 454.9 818 37.7
Cpa.g.sc19.12 Carica papaya HOM05D002310 ORTHO05D002326 6.1e-125 452.6 747 38.4
Manes.10G057200 Manihot esculenta HOM05D002310 ORTHO05D002326 8.0e-125 452.2 798 37.2
Thecc.10G104000 Theobroma cacao HOM05D002310 ORTHO05D002326 1.5e-123 448.0 796 37.1
Dinv06794 Davidia involucrata HOM05D002310 ORTHO05D002326 1.3e-122 444.9 790 38.9
Duzib114G0931 Durio zibethinus HOM05D002310 ORTHO05D002326 1.3e-122 444.9 797 37.0
Gohir.A05G395100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 6.3e-122 442.6 797 37.5
Gohir.D04G019900 Gossypium hirsutum HOM05D002310 ORTHO05D002326 6.3e-122 442.6 796 37.2
Gorai.012G023700 Gossypium raimondii HOM05D002310 ORTHO05D002326 2.7e-120 437.2 797 37.3
CANSAT56G1674 Cannabis sativa HOM05D002310 ORTHO05D002326 3.5e-120 436.8 991 33.7
Duzib106G1173 Durio zibethinus HOM05D002310 ORTHO05D002326 1.6e-117 427.9 799 37.7
COL.COLO4_20106 Corchorus olitorius HOM05D002310 ORTHO05D002326 6.8e-116 422.5 804 36.7
Glyma.10G202800 Glycine max HOM05D002310 ORTHO05D002326 3.0e-108 397.1 783 35.9
Glyma.20G187500 Glycine max HOM05D002310 ORTHO05D002326 7.5e-107 392.5 781 36.1
CSS0033098 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 2.9e-106 390.6 809 35.6
TWI38G0268 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 4.1e-105 386.7 789 34.9
TWI15G0532 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 7.8e-104 382.5 793 35.7
arahy.Tifrunner.gnm1.ann1.Y62G5D Arachis hypogaea HOM05D002310 ORTHO05D002326 2.0e-99 367.9 786 33.1
arahy.Tifrunner.gnm1.ann1.WY8BRN Arachis hypogaea HOM05D002310 ORTHO05D002326 1.7e-98 364.8 786 33.0
Dinv01755 Davidia involucrata HOM05D002310 ORTHO05D002326 3.7e-98 363.6 562 40.6
Lj2C29T14 Lonicera japonica HOM05D002310 ORTHO05D002326 6.4e-98 362.8 793 34.4
Actinidia18583 Actinidia chinensis HOM05D002310 ORTHO05D002326 8.6e-95 352.4 796 35.2
Lj5g0012410 Lotus japonicus HOM05D002310 ORTHO05D002326 7.3e-94 349.4 784 33.2
TAR633G0746 Trochodendron aralioides HOM05D002310 ORTHO05D002326 9.5e-94 349.0 788 36.4
Hma1.2p1_0246F.1_g101720 Hydrangea macrophylla HOM05D002310 ORTHO05D002326 8.9e-92 342.4 797 33.1
Lalb_Chr02g0151431 Lupinus albus HOM05D002310 ORTHO05D002326 2.6e-91 340.9 759 34.1
Lalb_Chr21g0313261 Lupinus albus HOM05D002310 ORTHO05D002326 5.8e-91 339.7 782 33.5
Phvul.007G104100 Phaseolus vulgaris HOM05D002310 ORTHO05D002326 4.9e-90 336.7 777 34.0
Ca_10501_v3 Cicer arietinum L. HOM05D002310 ORTHO05D002326 4.1e-89 333.6 785 33.2
Psat6g176920 Pisum sativum HOM05D002310 ORTHO05D002326 9.2e-89 332.4 799 32.8
Ciclev10030758m.g Citrus clementina HOM05D002310 ORTHO05D002326 2.5e-86 324.3 498 38.8
ClCG08G008160 Citrullus lanatus HOM05D002310 ORTHO05D002326 2.1e-85 321.2 753 34.5
Sed0017107 Sechium edule HOM05D002310 ORTHO05D002326 1.1e-81 308.9 756 32.7
Medtr1g492940 Medicago truncatula HOM05D002310 ORTHO05D002326 8.1e-77 292.7 886 29.8
Rhsim03G0104900 Rhododendron simsii HOM05D002310 ORTHO05D002326 1.4e-76 292.0 786 32.7
MELO3C019889.2 Cucumis melo HOM05D002310 ORTHO05D002326 1.2e-75 288.9 789 32.7
CsaV3_6G004130 Cucumis sativus L. HOM05D002310 ORTHO05D002326 3.2e-73 280.8 788 31.6
TPR.G2524 Trifolium pratense HOM05D002310 ORTHO05D002326 2.0e-67 261.5 919 28.1
vmacro07230 Vaccinium macrocarpon HOM05D002310 ORTHO05D002326 3.4e-67 260.8 565 33.8
Nn6g35014 Nelumbo nucifera HOM05D002310 ORTHO05D002326 6.2e-53 213.4 768 29.6
PGR044G0491 Punica granatum HOM05D002310 ORTHO05D002326 3.8e-50 204.1 791 27.8
Aqoxy4G02858 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 2.7e-48 198.0 800 28.0
Eucgr.J01002 Eucalyptus grandis HOM05D002310 ORTHO05D002326 5.9e-43 180.3 503 31.8
Sc09g0005520 Simmondsia chinensis HOM05D002310 ORTHO05D002326 6.7e-39 166.8 728 26.1
Lsat_1_v5_gn_8_24480 Lactuca sativa HOM05D002310 ORTHO05D002326 1.3e-34 152.5 582 27.0
DCAR_006351 Daucus carota HOM05D002310 ORTHO05D002326 8.5e-34 149.8 633 26.7
Dinv42583 Davidia involucrata HOM05D002310 ORTHO05D002326 1.9e-33 148.7 655 26.7
Sed0026294 Sechium edule HOM05D002310 ORTHO05D002326 2.1e-32 145.2 298 34.6
PSO443G0025 Papaver somniferum HOM05D002310 ORTHO05D002326 3.6e-32 144.4 715 25.3
AUR62030725 Chenopodium quinoa HOM05D002310 ORTHO05D002326 3.0e-31 141.4 750 25.7
ECA233G1823 Erigeron canadensis HOM05D002310 ORTHO05D002326 3.0e-31 141.4 610 25.1
CSS0005169 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 5.1e-31 140.6 780 26.4
AUR62036362 Chenopodium quinoa HOM05D002310 ORTHO05D002326 5.1e-31 140.6 744 25.4
Nitab4.5_0000962g0080 Nicotiana tabacum HOM05D002310 ORTHO05D002326 2.5e-30 138.3 650 26.0
Nitab4.5_0005390g0030 Nicotiana tabacum HOM05D002310 ORTHO05D002326 5.7e-30 137.1 663 26.4
PSO384G5061 Papaver somniferum HOM05D002310 ORTHO05D002326 2.4e-28 131.7 702 24.8
Aqoxy2G01357 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 1.5e-27 129.0 800 25.0
HanXRQChr08g0217861 Helianthus annuus HOM05D002310 ORTHO05D002326 3.4e-27 127.9 612 25.0
Peaxi162Scf00244g01214 Petunia axillaris HOM05D002310 ORTHO05D002326 4.5e-27 127.5 513 27.7
Ah.04g163710 Amaranthus hybridus HOM05D002310 ORTHO05D002326 2.2e-26 125.2 791 24.4
ATR0820G154 Amborella trichopoda HOM05D002310 ORTHO05D002326 5.0e-26 124.0 793 25.9
Cc02_g09970 Coffea canephora HOM05D002310 ORTHO05D002326 6.5e-26 123.6 511 27.0
PGSC0003DMG400019495 Solanum tuberosum HOM05D002310 ORTHO05D002326 6.1e-24 117.1 608 25.7
CAN.G534.15 Capsicum annuum HOM05D002310 ORTHO05D002326 3.9e-23 114.4 667 25.9
Sopen11g003200 Solanum pennellii HOM05D002310 ORTHO05D002326 5.1e-23 114.0 609 26.1
Solyc11g007310.3 Solanum lycopersicum HOM05D002310 ORTHO05D002326 1.1e-20 106.3 492 26.6
Rhsim13G0106900 Rhododendron simsii HOM05D002310 ORTHO05D002326 9.1e-20 103.2 598 25.6
GSVIVG01031382001 Vitis vinifera HOM05D002310 ORTHO05D002326 2.2e-18 98.6 512 25.8
Oeu059860.1 Olea europaea HOM05D002310 ORTHO05D002326 2.1e-16 92.0 187 35.8
Actinidia07217 Actinidia chinensis HOM05D002310 ORTHO05D002326 3.7e-13 81.3 765 23.7
DCAR_012177 Daucus carota HOM05D002310 ORTHO05D002326 5.9e-11 73.9 99 42.4
CDE06G0922 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 8.5e-10 70.1 729 23.3
GSVIVG01034740001 Vitis vinifera HOM05D002310 ORTHO05D002326 5.5e-09 67.4 39 74.4
Lj2A990G28 Lonicera japonica HOM05D002310 ORTHO05D002326 3.6e-08 64.7 421 23.5
Thecc.09G289700 Theobroma cacao HOM05D002310 ORTHO05D002326 6.1e-08 63.9 88 46.6
PGR102G1882 Punica granatum HOM05D002310 ORTHO05D002326 8.0e-08 63.5 388 25.5
Actinidia24186 Actinidia chinensis HOM05D002310 ORTHO05D002326 1.8e-07 62.4 375 24.5
SGA_v2.0_scaffold147G36352 Striga asiatica HOM05D002310 ORTHO05D002326 8.8e-07 60.1 86 39.5
Atru.chr3.3356 Acer truncatum HOM05D002310 ORTHO05D002326 2.6e-06 58.5 87 41.4
Manes.11G158900 Manihot esculenta HOM05D002310 ORTHO05D002326 7.5e-06 57.0 49 53.1
Potri.009G147201 Populus trichocarpa HOM05D002310 ORTHO05D002326 7.5e-06 57.0 59 49.2
SEGI_33353 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 7.5e-06 57.0 222 26.6
Eucgr.B03884 Eucalyptus grandis HOM05D002310 ORTHO05D002326 9.8e-06 56.6 232 27.6


User provided reference genes

Program Settings