Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G079600 Prunus persica HOM05D003360 ORTHO05D003759 2.3e-29 131.7 74 100.0
Duzib128G1587 Durio zibethinus HOM05D003360 ORTHO05D003759 1.7e-16 89.0 74 66.2
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 2.2e-16 88.6 79 63.3
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.2e-16 88.6 80 63.8
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.2e-16 88.6 80 63.8
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 3.8e-16 87.8 77 64.9
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 1.1e-15 86.3 70 67.1
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 1.1e-15 86.3 70 67.1
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 1.1e-15 86.3 70 67.1
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 1.1e-15 86.3 77 63.6
Cfa011263 Carpinus fangiana HOM05D003360 ORTHO05D003759 1.4e-15 85.9 72 66.7
Haze_02515 Corylus avellana HOM05D003360 ORTHO05D003759 1.4e-15 85.9 72 66.7
Sed0007233 Sechium edule HOM05D003360 ORTHO05D003759 1.9e-15 85.5 66 68.2
Ciclev10033849m.g Citrus clementina HOM05D003360 ORTHO05D003759 2.4e-15 85.1 72 66.7
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 7.1e-15 83.6 74 63.5
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 7.1e-15 83.6 75 61.3
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 9.3e-15 83.2 74 64.9
Cpa.g.sc5.39 Carica papaya HOM05D003360 ORTHO05D003759 1.2e-14 82.8 77 61.0
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 1.2e-14 82.8 75 64.0
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 1.2e-14 82.8 76 61.8
TAR623G1482 Trochodendron aralioides HOM05D003360 ORTHO05D003759 1.2e-14 82.8 76 60.5
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 1.6e-14 82.4 72 63.9
Potri.010G237600 Populus trichocarpa HOM05D003360 ORTHO05D003759 2.1e-14 82.0 74 67.6
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 2.7e-14 81.6 74 62.2
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 3.5e-14 81.3 74 62.2
SHI23956 Sapria himalayana HOM05D003360 ORTHO05D003759 4.6e-14 80.9 73 60.3
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 6.0e-14 80.5 75 62.7
Haze_19591 Corylus avellana HOM05D003360 ORTHO05D003759 1.0e-13 79.7 74 59.5
Sabra10G0185900 Salix brachista HOM05D001901 ORTHO05D001850 1.0e-13 79.7 74 64.9
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 1.3e-13 79.3 72 66.7
Glyma.10G071100 Glycine max HOM05D003360 ORTHO05D003759 1.3e-13 79.3 77 59.7
Nn2g14121 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.3e-13 79.3 77 62.3
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 1.3e-13 79.3 74 59.5
CiPaw.10G008200 Carya illinoinensis HOM05D003360 ORTHO05D003759 1.8e-13 79.0 73 61.6
Potri.008G021766 Populus trichocarpa HOM05D003360 ORTHO05D003759 1.8e-13 79.0 55 76.4
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 3.0e-13 78.2 80 58.8
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 3.0e-13 78.2 69 60.9
Lalb_Chr21g0315791 Lupinus albus HOM05D003360 ORTHO05D003759 5.1e-13 77.4 75 61.3
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 5.1e-13 77.4 71 60.6
Cfa016591 Carpinus fangiana HOM05D003360 ORTHO05D003759 6.7e-13 77.0 74 58.1
Eucgr.K02053 Eucalyptus grandis HOM05D003360 ORTHO05D003759 6.7e-13 77.0 82 56.1
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 8.7e-13 76.6 72 59.7
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 8.7e-13 76.6 72 59.7
Manes.09G056502 Manihot esculenta HOM05D003360 ORTHO05D003759 8.7e-13 76.6 75 60.0
Solyc11g007100.1 Solanum lycopersicum HOM05D003360 ORTHO05D003759 8.7e-13 76.6 72 59.7
Sopen11g003020 Solanum pennellii HOM05D003360 ORTHO05D003759 8.7e-13 76.6 72 59.7
QL07p039321 Quercus lobata HOM05D003360 ORTHO05D003759 1.5e-12 75.9 76 55.3
GSVIVG01011278001 Vitis vinifera HOM05D003360 ORTHO05D003759 1.5e-12 75.9 78 62.8
BcaB06g28928 Brassica carinata HOM05D003360 ORTHO05D003759 1.9e-12 75.5 70 62.9
Glyma.03G194300 Glycine max HOM05D003360 ORTHO05D003759 3.3e-12 74.7 75 56.0
Manes.10G058400 Manihot esculenta HOM05D003360 ORTHO05D003759 3.3e-12 74.7 43 88.4
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 4.3e-12 74.3 64 59.4
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 4.3e-12 74.3 74 60.8
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 4.3e-12 74.3 73 58.9
CSS0017316 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 5.6e-12 73.9 73 57.5
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 5.6e-12 73.9 78 59.0
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 7.4e-12 73.6 68 63.2
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 7.4e-12 73.6 68 63.2
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 7.4e-12 73.6 68 63.2
Glyma.19G194100 Glycine max HOM05D003360 ORTHO05D003759 7.4e-12 73.6 75 54.7
Thhalv10017499m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 9.6e-12 73.2 69 63.8
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 9.6e-12 73.2 75 58.7
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 9.6e-12 73.2 76 55.3
Oeu009227.1 Olea europaea HOM05D003360 ORTHO05D003759 9.6e-12 73.2 72 55.6
PGR004G2902 Punica granatum HOM05D003360 ORTHO05D003759 9.6e-12 73.2 79 54.4
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 9.6e-12 73.2 54 66.7
EL10Ac7g16935 Beta vulgaris HOM05D003360 ORTHO05D003759 1.6e-11 72.4 48 75.0
Lj1g0000501 Lotus japonicus HOM05D003360 ORTHO05D003759 1.6e-11 72.4 71 54.9
MD12G1023500 Malus domestica HOM05D003360 ORTHO05D003759 1.6e-11 72.4 79 53.2
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 1.6e-11 72.4 68 61.8
TAR636G1359 Trochodendron aralioides HOM05D003360 ORTHO05D003759 1.6e-11 72.4 76 55.3
AL4G32430 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 2.1e-11 72.0 46 78.3
BcaC02g07614 Brassica carinata HOM05D003360 ORTHO05D003759 2.1e-11 72.0 46 78.3
BcaC02g07615 Brassica carinata HOM05D003360 ORTHO05D003759 2.1e-11 72.0 46 78.3
A04p27810 Brassica napus HOM05D003360 ORTHO05D003759 2.1e-11 72.0 46 78.3
Carub.0004s1807 Capsella rubella HOM05D003360 ORTHO05D003759 2.1e-11 72.0 46 78.3
Sp4g18540 Schrenkiella parvula HOM05D003360 ORTHO05D003759 2.1e-11 72.0 46 78.3
TWI74G1584 Tripterygium wilfordii HOM05D003360 ORTHO05D003759 2.1e-11 72.0 72 59.7
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 2.1e-11 72.0 66 59.1
arahy.Tifrunner.gnm1.ann1.3KS0IU Arachis hypogaea HOM05D003360 ORTHO05D003759 2.8e-11 71.6 71 59.2
arahy.Tifrunner.gnm1.ann1.W71F47 Arachis hypogaea HOM05D003360 ORTHO05D003759 2.8e-11 71.6 71 59.2
BolC4t28009H Brassica oleracea HOM05D003360 ORTHO05D003759 2.8e-11 71.6 69 62.3
BNapus_Darmor_BZH_scaffold_239p00010 Brassica napus HOM05D003360 ORTHO05D003759 3.7e-11 71.2 69 62.3
C04p65310 Brassica napus HOM05D003360 ORTHO05D003759 3.7e-11 71.2 69 62.3
BraA04t18273Z Brassica rapa HOM05D003360 ORTHO05D003759 3.7e-11 71.2 69 62.3
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 3.7e-11 71.2 81 50.6
BcaC01g05667 Brassica carinata HOM05D003360 ORTHO05D003759 4.8e-11 70.9 70 55.7
A03p20030 Brassica napus HOM05D003360 ORTHO05D003759 4.8e-11 70.9 70 55.7
BolC3t14744H Brassica oleracea HOM05D003360 ORTHO05D003759 4.8e-11 70.9 70 55.7
BraA03t11254Z Brassica rapa HOM05D003360 ORTHO05D003759 4.8e-11 70.9 70 55.7
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 4.8e-11 70.9 78 56.4
BcaC02g11743 Brassica carinata HOM05D003360 ORTHO05D003759 6.2e-11 70.5 46 76.1
C04p11810 Brassica napus HOM05D003360 ORTHO05D003759 6.2e-11 70.5 46 76.1
BolC4t22830H Brassica oleracea HOM05D003360 ORTHO05D003759 6.2e-11 70.5 46 76.1
CSS0023349 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 6.2e-11 70.5 49 75.5
BcaB02g09363 Brassica carinata HOM05D003360 ORTHO05D003759 8.1e-11 70.1 69 59.4
A05p09550 Brassica napus HOM05D003360 ORTHO05D003759 8.1e-11 70.1 54 70.4
CSS0011540 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 8.1e-11 70.1 73 61.6
Haze_05882 Corylus avellana HOM05D000493 ORTHO05D003759 8.1e-11 70.1 72 56.9
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 8.1e-11 70.1 72 51.4
Psat6g080880 Pisum sativum HOM05D003360 ORTHO05D003759 1.1e-10 69.7 73 53.4
THA.LOC109116419 Tarenaya hassleriana HOM05D003360 ORTHO05D003759 1.1e-10 69.7 47 72.3
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 1.1e-10 69.7 75 52.0
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 1.1e-10 69.7 75 52.0
arahy.Tifrunner.gnm1.ann1.V8S7TV Arachis hypogaea HOM05D003360 ORTHO05D003759 1.4e-10 69.3 86 51.2
arahy.Tifrunner.gnm1.ann1.YCS2XP Arachis hypogaea HOM05D003360 ORTHO05D003759 1.4e-10 69.3 86 51.2
BraA05t19908Z Brassica rapa HOM05D003360 ORTHO05D003759 1.4e-10 69.3 46 73.9
CARHR130590 Cardamine hirsuta HOM05D003360 ORTHO05D003759 1.4e-10 69.3 45 75.6
BraA04t16375Z Brassica rapa HOM05D003360 ORTHO05D003759 1.8e-10 68.9 48 68.8
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 1.8e-10 68.9 76 51.3
Haze_05346 Corylus avellana HOM05D003360 ORTHO05D003759 1.8e-10 68.9 71 56.3
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 1.8e-10 68.9 77 51.9
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 1.8e-10 68.9 73 52.1
Nitab4.5_0002400g0080 Nicotiana tabacum HOM05D003360 ORTHO05D003759 2.4e-10 68.6 77 51.9
C03p23480 Brassica napus HOM05D003360 ORTHO05D003759 3.1e-10 68.2 70 54.3
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 3.1e-10 68.2 77 49.4
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 4.0e-10 67.8 69 52.2
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 4.0e-10 67.8 69 52.2
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 4.0e-10 67.8 69 52.2
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 4.0e-10 67.8 69 52.2
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 4.0e-10 67.8 72 50.0
Medtr7g104410 Medicago truncatula HOM05D003360 ORTHO05D003759 4.0e-10 67.8 76 52.6
BcaC02g09220 Brassica carinata HOM05D003360 ORTHO05D003759 5.3e-10 67.4 48 66.7
A04p06710 Brassica napus HOM05D003360 ORTHO05D003759 5.3e-10 67.4 48 66.7
C04p40170 Brassica napus HOM05D003360 ORTHO05D003759 5.3e-10 67.4 48 66.7
BolC4t25595H Brassica oleracea HOM05D003360 ORTHO05D003759 5.3e-10 67.4 48 66.7
Lsat_1_v5_gn_2_104661 Lactuca sativa HOM05D001901 ORTHO05D001850 5.3e-10 67.4 71 53.5
A07p21190 Brassica napus HOM05D003360 ORTHO05D003759 6.9e-10 67.0 70 55.7
BraA07t29806Z Brassica rapa HOM05D003360 ORTHO05D003759 6.9e-10 67.0 70 55.7
DCAR_009156 Daucus carota HOM05D003360 ORTHO05D003759 6.9e-10 67.0 79 50.6
Hma1.2p1_0084F.1_g043630 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 6.9e-10 67.0 76 47.4
Nitab4.5_0001437g0150 Nicotiana tabacum HOM05D003360 ORTHO05D003759 6.9e-10 67.0 72 51.4
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 9.0e-10 66.6 77 48.1
Nitab4.5_0001725g0010 Nicotiana tabacum HOM05D003360 ORTHO05D003759 9.0e-10 66.6 78 51.3
Atru.chr12.1006 Acer truncatum HOM05D003360 ORTHO05D003759 1.2e-09 66.2 70 57.1
Aqoxy4G02806 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 1.2e-09 66.2 76 56.6
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 1.2e-09 66.2 69 50.7
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 1.2e-09 66.2 69 50.7
CAN.G397.29 Capsicum annuum HOM05D003360 ORTHO05D003759 1.2e-09 66.2 47 68.1
Peaxi162Scf00040g10112 Petunia axillaris HOM05D003360 ORTHO05D003759 1.2e-09 66.2 73 50.7
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 1.5e-09 65.9 69 52.2
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 1.5e-09 65.9 69 52.2
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 1.5e-09 65.9 69 52.2
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 1.5e-09 65.9 69 52.2
Os04g0411200 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 1.5e-09 65.9 46 67.4
BcaB01g03851 Brassica carinata HOM05D003360 ORTHO05D003759 2.0e-09 65.5 45 71.1
BcaB02g08554 Brassica carinata HOM05D003360 ORTHO05D003759 2.0e-09 65.5 48 64.6
ECA238G0205 Erigeron canadensis HOM05D003360 ORTHO05D003759 2.0e-09 65.5 61 60.7
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 2.0e-09 65.5 76 55.3
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 2.6e-09 65.1 74 47.3
Aa31LG5G21450 Aethionema arabicum HOM05D003360 ORTHO05D003759 3.4e-09 64.7 46 71.7
Medtr1g060310 Medicago truncatula HOM05D003360 ORTHO05D003759 3.4e-09 64.7 73 52.1
Psat3g033920 Pisum sativum HOM05D003360 ORTHO05D003759 3.4e-09 64.7 75 50.7
unitig_27.g25402 Utricularia gibba HOM05D003360 ORTHO05D003759 3.4e-09 64.7 64 53.1
unitig_30.g34057 Utricularia gibba HOM05D003360 ORTHO05D003759 3.4e-09 64.7 64 53.1
HPP92_000004 Vanilla planifolia HOM05D003360 ORTHO05D003759 3.4e-09 64.7 76 52.6
AL5G33550 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 4.5e-09 64.3 67 52.2
HanXRQChr02g0051411 Helianthus annuus HOM05D003360 ORTHO05D003759 4.5e-09 64.3 71 47.9
Zm00001eb242710 Zea mays HOM05D003360 ORTHO05D003759 4.5e-09 64.3 47 66.0
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 7.6e-09 63.5 67 52.2
Gohir.D01G196550 Gossypium hirsutum HOM05D003360 ORTHO05D003759 7.6e-09 63.5 45 66.7
Gorai.002G240800 Gossypium raimondii HOM05D003360 ORTHO05D003759 7.6e-09 63.5 45 66.7
Hma1.2p1_0356F.1_g134050 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 7.6e-09 63.5 79 53.2
Sopen09g004380 Solanum pennellii HOM05D003360 ORTHO05D003759 7.6e-09 63.5 84 45.2
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 1.0e-08 63.2 67 55.2
PGSC0003DMG400002695 Solanum tuberosum HOM05D003360 ORTHO05D003759 1.0e-08 63.2 85 44.7
BcaB02g07817 Brassica carinata HOM05D003360 ORTHO05D003759 1.3e-08 62.8 69 50.7
Gohir.A12G092744 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.3e-08 62.8 56 66.1
Thecc.10G106800 Theobroma cacao HOM05D003360 ORTHO05D003759 1.3e-08 62.8 76 56.6
TPR.G19518 Trifolium pratense HOM05D003360 ORTHO05D003759 1.3e-08 62.8 77 48.1
HanXRQChr13g0402021 Helianthus annuus HOM05D003360 ORTHO05D003759 1.7e-08 62.4 67 53.7
Sp5g09560 Schrenkiella parvula HOM05D003360 ORTHO05D003759 1.7e-08 62.4 67 52.2
AT3G52770 Arabidopsis thaliana HOM05D003360 ORTHO05D003759 2.9e-08 61.6 67 50.7
Gohir.D12G091360 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.9e-08 61.6 66 59.1
Gorai.008G098900 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.9e-08 61.6 66 59.1
Gohir.A01G207150 Gossypium hirsutum HOM05D003360 ORTHO05D003759 6.5e-08 60.5 45 64.4
Zm00001eb421890 Zea mays HOM05D003360 ORTHO05D003759 6.5e-08 60.5 56 57.1
Os02g0530500 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 8.4e-08 60.1 65 46.2
Oeu061778.1 Olea europaea HOM05D003360 ORTHO05D003759 1.1e-07 59.7 74 48.6
Thhalv10011130m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 1.9e-07 58.9 65 52.3
FAN05G5428 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.9e-07 58.9 57 63.2
FAN14G4582 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.9e-07 58.9 57 63.2
Nitab4.5_0003774g0050 Nicotiana tabacum HOM05D003360 ORTHO05D003759 1.9e-07 58.9 72 47.2
SGA_v2.0_scaffold35G14071 Striga asiatica HOM05D001616 ORTHO05D003701 2.5e-07 58.5 79 43.0
Aqoxy2G01218 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 4.2e-07 57.8 75 49.3
Lalb_Chr25g0288531 Lupinus albus HOM05D003360 ORTHO05D003759 5.5e-07 57.4 46 65.2
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 6.0e-06 53.9 72 47.2
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 6.0e-06 53.9 77 40.3


User provided reference genes

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