Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.3e-158 563.1 303 100.0
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.1e-135 486.9 303 86.5
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 2.5e-135 485.7 303 84.8
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 7.4e-135 484.2 303 81.5
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.2e-131 472.6 301 80.4
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 2.9e-131 472.2 301 80.4
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 8.5e-131 470.7 301 80.1
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.2e-130 468.8 301 79.7
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 5.0e-123 444.9 301 77.1
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 5.2e-104 381.7 304 69.1
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.5e-103 380.2 306 68.0
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 1.5e-103 380.2 321 64.5
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 7.5e-103 377.9 308 66.6
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.7e-102 376.7 313 67.1
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 2.8e-102 375.9 315 64.4
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 2.4e-101 372.9 303 69.3
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.6e-100 370.2 316 67.7
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 2.7e-100 369.4 311 67.2
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 5.9e-100 368.2 221 81.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.0e-99 367.5 302 64.6
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 1.0e-99 367.5 309 64.4
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 2.3e-99 366.3 319 65.2
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 3.8e-99 365.5 310 66.1
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 8.6e-99 364.4 313 63.3
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 2.5e-98 362.8 311 65.3
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 9.5e-98 360.9 315 64.1
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.6e-97 360.1 312 67.3
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.1e-97 359.8 312 65.4
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 4.7e-97 358.6 315 61.0
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.0e-96 357.5 312 64.7
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 4.0e-96 355.5 307 61.9
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 4.0e-96 355.5 320 61.2
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 5.2e-96 355.1 315 62.9
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 6.8e-96 354.8 314 62.4
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.2e-95 354.0 314 62.4
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.2e-95 354.0 220 78.6
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.0e-95 353.2 310 60.6
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 2.6e-95 352.8 301 62.8
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 3.4e-95 352.4 308 62.7
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 3.4e-95 352.4 311 62.4
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 4.4e-95 352.1 301 62.8
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 5.7e-95 351.7 318 65.4
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 7.5e-95 351.3 325 60.6
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 2.2e-94 349.7 222 77.9
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.9e-94 348.6 314 63.4
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 6.3e-94 348.2 311 61.4
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 8.3e-94 347.8 303 61.1
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 1.4e-93 347.1 306 62.7
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.8e-93 346.7 308 61.0
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 1.8e-93 346.7 307 63.8
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 2.4e-93 346.3 315 64.4
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 3.1e-93 345.9 301 66.4
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 5.4e-93 345.1 314 61.5
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 7.0e-93 344.7 309 61.8
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 9.2e-93 344.4 303 60.1
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.2e-92 344.0 316 63.0
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 1.2e-92 344.0 314 61.8
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.5e-92 342.4 222 74.8
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 5.9e-92 341.7 313 62.9
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 2.9e-91 339.3 333 59.5
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 6.6e-91 338.2 301 63.8
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 6.6e-91 338.2 311 60.5
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 8.6e-91 337.8 304 60.9
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 8.6e-91 337.8 315 57.5
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-90 337.4 301 63.1
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 1.5e-90 337.0 312 59.6
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.5e-90 336.3 302 59.6
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 2.5e-90 336.3 209 79.4
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 3.3e-90 335.9 311 58.8
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 5.6e-90 335.1 308 59.1
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 7.3e-90 334.7 308 59.4
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 9.5e-90 334.3 299 61.2
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 1.2e-89 334.0 311 60.1
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.1e-89 333.2 316 59.5
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 2.1e-89 333.2 315 59.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 2.8e-89 332.8 220 73.2
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 3.6e-89 332.4 302 59.6
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 3.6e-89 332.4 302 59.6
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.0e-88 330.9 277 63.9
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.0e-88 329.3 240 69.6
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 6.8e-88 328.2 301 58.5
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 6.8e-88 328.2 304 59.5
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 8.9e-88 327.8 296 58.8
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 8.9e-88 327.8 302 58.6
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.2e-87 327.4 310 60.6
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.2e-87 327.4 218 73.4
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.5e-87 327.0 222 73.4
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 2.0e-87 326.6 323 62.8
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 5.7e-87 325.1 302 57.6
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 7.5e-87 324.7 325 56.9
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.2e-86 323.2 211 73.5
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.9e-86 322.8 314 58.9
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 3.7e-86 322.4 306 61.8
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 3.7e-86 322.4 314 58.3
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 3.7e-86 322.4 216 71.3
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 1.8e-85 320.1 220 70.5
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 5.4e-85 318.5 215 71.6
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 2.0e-84 316.6 322 58.7
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.0e-84 316.6 293 60.1
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 1.3e-83 313.9 211 72.0
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 1.7e-83 313.5 302 61.3
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 3.0e-83 312.8 302 61.3
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 3.0e-83 312.8 215 72.1
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 1.6e-81 307.0 196 76.5
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 2.1e-81 306.6 267 57.7
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 8.0e-81 304.7 212 65.1
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 3.1e-80 302.8 293 61.8
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 9.2e-77 291.2 304 52.6
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.2e-76 290.8 304 54.9
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 9.5e-74 281.2 303 54.1
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 2.9e-70 269.6 325 55.1
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 8.3e-70 268.1 278 55.4
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 5.4e-69 265.4 212 56.6
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 6.6e-67 258.5 238 64.7
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.3e-66 256.1 212 56.6
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 4.4e-63 245.7 198 63.6
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 7.6e-63 245.0 235 50.6
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 9.2e-61 238.0 167 70.7
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.5e-55 220.7 192 60.9
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 8.4e-46 188.3 168 54.8
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.0e-43 181.4 110 79.1
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 8.1e-41 171.8 161 50.9
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 4.0e-40 169.5 153 58.8
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 9.9e-39 164.9 145 57.9
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 4.3e-34 149.4 83 81.9
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 8.2e-33 145.2 83 80.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-32 143.3 109 67.0
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 3.8e-30 136.3 207 37.7
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 8.4e-30 135.2 125 52.8
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-26 124.8 87 69.0
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 9.7e-26 121.7 68 80.9
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 2.2e-25 120.6 150 36.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 4.5e-23 112.8 199 32.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 4.6e-20 102.8 147 46.9
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 8.2e-17 92.0 142 45.8
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 3.4e-15 86.7 57 68.4
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 6.1e-12 75.9 83 50.6
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.9e-11 73.2 136 40.4
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.0e-10 70.9 88 46.6
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 2.0e-07 60.8 47 61.7
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.6e-07 60.5 37 75.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 2.2e-06 57.4 31 74.2
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.9e-06 57.0 35 74.3
CDE11G0650 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 8.5e-06 55.5 37 64.9


User provided reference genes

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