Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.7e-49 198.4 100 100.0
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.9e-34 149.1 90 86.7
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 2.4e-29 132.1 96 71.9
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.2e-28 129.8 84 73.8
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 2.0e-28 129.0 91 72.5
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.3e-27 126.3 85 78.8
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.4e-26 122.9 84 73.8
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 5.4e-26 120.9 84 71.4
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 4.6e-25 117.9 78 70.5
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 6.0e-25 117.5 71 78.9
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 7.8e-25 117.1 84 65.5
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.3e-24 116.3 82 69.5
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.7e-24 115.9 83 68.7
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.7e-24 115.9 84 66.7
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.7e-24 115.9 84 67.9
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.7e-24 115.9 86 68.6
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.3e-24 115.5 84 66.7
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.0e-24 115.2 79 70.9
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.9e-24 114.8 84 67.9
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 5.1e-24 114.4 72 72.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 5.1e-24 114.4 84 67.9
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 6.6e-24 114.0 84 64.3
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 8.7e-24 113.6 84 64.3
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 8.7e-24 113.6 77 70.1
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.5e-23 112.8 66 77.3
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 2.5e-23 112.1 84 63.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.3e-23 111.7 72 72.2
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 3.3e-23 111.7 84 63.1
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 3.3e-23 111.7 82 63.4
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 4.3e-23 111.3 69 71.0
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 5.6e-23 110.9 83 65.1
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 5.6e-23 110.9 83 65.1
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 7.3e-23 110.5 88 60.2
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.3e-22 109.8 67 73.1
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.3e-22 109.8 70 70.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 1.3e-22 109.8 84 64.3
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.3e-22 109.8 83 62.7
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.1e-22 109.0 84 61.9
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.8e-22 108.6 83 66.3
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 3.6e-22 108.2 87 59.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 3.6e-22 108.2 79 63.3
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 3.6e-22 108.2 79 63.3
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 4.8e-22 107.8 84 63.1
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 6.2e-22 107.5 85 64.7
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 6.2e-22 107.5 95 62.1
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.1e-21 106.7 81 63.0
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.1e-21 106.7 67 71.6
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.8e-21 105.9 66 71.2
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.8e-21 105.9 73 65.8
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 3.1e-21 105.1 72 65.3
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 3.1e-21 105.1 70 67.1
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 3.1e-21 105.1 82 59.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 4.0e-21 104.8 76 63.2
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 4.0e-21 104.8 76 63.2
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 4.0e-21 104.8 81 61.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.9e-21 104.0 68 67.6
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 9.0e-21 103.6 61 75.4
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.2e-20 103.2 81 59.3
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.5e-20 102.8 74 67.6
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 3.4e-20 101.7 69 68.1
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 4.5e-20 101.3 90 56.7
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 5.8e-20 100.9 82 58.5
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 7.6e-20 100.5 66 68.2
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 2.9e-19 98.6 79 58.2
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.4e-19 97.4 67 65.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 6.4e-19 97.4 80 57.5
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.4e-19 97.4 80 57.5
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 8.4e-19 97.1 78 59.0
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 8.4e-19 97.1 57 73.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.4e-18 95.5 78 59.0
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 3.2e-18 95.1 65 61.5
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.2e-18 94.7 76 53.9
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 7.1e-18 94.0 77 58.4
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 9.3e-18 93.6 70 60.0
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.2e-17 93.2 75 53.3
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 3.9e-16 88.2 82 59.8
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.6e-14 82.8 51 64.7
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.6e-14 82.8 62 54.8
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.6e-14 82.8 62 54.8
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.1e-14 82.4 68 54.4
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 3.7e-14 81.6 63 55.6
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.7e-14 81.6 64 56.2
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 6.2e-14 80.9 62 61.3
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 6.2e-14 80.9 61 55.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-13 80.1 61 54.1
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.1e-13 80.1 61 54.1
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.1e-13 80.1 85 49.4
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.4e-13 79.7 62 59.7
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.4e-13 79.7 82 45.1
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.8e-13 79.3 87 51.7
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.8e-13 79.3 89 48.3
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 2.4e-13 79.0 53 67.9
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.1e-13 78.6 63 57.1
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 6.9e-13 77.4 56 62.5
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 6.9e-13 77.4 83 49.4
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.2e-12 76.6 72 50.0
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 2.0e-12 75.9 84 48.8
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 2.0e-12 75.9 63 57.1
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 4.5e-12 74.7 74 45.9
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 5.8e-12 74.3 60 55.0
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 5.8e-12 74.3 60 55.0
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 5.8e-12 74.3 60 55.0
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 7.6e-12 73.9 83 47.0
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.0e-11 73.6 56 60.7
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.3e-11 73.2 60 56.7
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.7e-11 72.8 59 57.6
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 2.2e-11 72.4 56 51.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.8e-11 71.6 57 57.9
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 3.8e-11 71.6 108 35.2
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 3.8e-11 71.6 53 52.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 6.5e-11 70.9 56 55.4
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 6.5e-11 70.9 39 71.8
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 8.4e-11 70.5 46 58.7
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.4e-10 69.7 55 60.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 5.5e-10 67.8 61 52.5
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 5.5e-10 67.8 81 42.0
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 7.1e-10 67.4 60 60.0
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 9.3e-10 67.0 38 68.4
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 2.7e-09 65.5 57 54.4
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.3e-08 63.2 60 48.3
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.0e-08 62.0 65 43.1
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-08 61.6 53 50.9
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 3.9e-08 61.6 51 56.9
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 1.9e-07 59.3 42 52.4
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 4.3e-07 58.2 69 42.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 1.3e-06 56.6 44 50.0
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.3e-06 56.6 60 40.0
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 8.2e-06 53.9 80 36.2


User provided reference genes

Program Settings