Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 3.9e-176 621.3 308 100.0
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 2.6e-159 565.5 308 88.6
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.1e-154 550.1 308 86.7
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 7.3e-146 520.8 303 83.2
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 8.9e-144 513.8 308 80.2
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.8e-141 506.1 308 76.9
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.4e-141 504.6 308 79.9
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 3.5e-140 501.9 308 77.6
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.3e-139 499.2 309 78.0
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 6.6e-139 497.7 309 77.3
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 4.3e-138 495.0 309 77.7
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 5.6e-138 494.6 309 77.3
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 7.3e-138 494.2 309 77.3
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 2.8e-137 492.3 309 77.0
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 6.2e-137 491.1 306 76.1
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 1.1e-136 490.3 349 71.3
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 4.0e-136 488.4 309 75.4
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 6.8e-136 487.6 309 76.1
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.2e-135 486.9 308 75.3
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.2e-135 486.9 308 75.3
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.5e-135 486.5 310 75.5
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 2.6e-135 485.7 304 75.7
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.2e-134 482.6 311 74.6
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 2.9e-134 482.3 304 75.0
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 8.3e-134 480.7 309 74.8
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.1e-133 480.3 308 74.0
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.4e-133 479.9 310 76.1
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.9e-133 479.6 304 74.0
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.9e-133 479.6 309 73.1
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.4e-133 479.2 309 74.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 4.1e-133 478.4 304 74.7
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 4.1e-133 478.4 310 74.8
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 5.4e-133 478.0 308 74.4
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 9.2e-133 477.2 308 74.4
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 9.2e-133 477.2 310 75.5
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.6e-132 476.5 310 74.5
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 2.0e-132 476.1 308 74.4
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 2.0e-132 476.1 308 73.7
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 4.6e-132 474.9 309 72.2
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 6.0e-132 474.6 316 72.2
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.3e-131 472.6 308 73.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.0e-131 472.2 310 73.5
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 6.6e-131 471.1 309 71.5
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 1.5e-130 469.9 305 75.1
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 2.5e-130 469.2 313 73.5
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-130 468.0 324 69.8
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 6.2e-129 464.5 305 73.1
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 8.1e-129 464.2 305 73.4
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.1e-128 463.8 310 72.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 2.3e-128 462.6 305 74.1
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 5.2e-128 461.5 310 71.3
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.5e-127 459.9 306 72.5
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 3.4e-127 458.8 306 73.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 5.8e-127 458.0 304 73.0
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 5.8e-127 458.0 306 71.9
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.2e-126 456.1 306 73.9
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 4.9e-126 454.9 313 70.3
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 1.4e-125 453.4 299 72.9
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 4.1e-125 451.8 309 71.8
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.6e-124 449.9 306 71.2
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 2.1e-124 449.5 387 61.2
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 1.0e-123 447.2 306 70.9
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 3.0e-123 445.7 306 69.6
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 3.9e-123 445.3 305 70.8
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 5.1e-123 444.9 276 77.2
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.3e-122 441.8 283 77.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 5.6e-122 441.4 289 74.4
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 5.6e-122 441.4 305 69.5
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.6e-121 438.7 310 68.1
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 8.1e-121 437.6 310 68.1
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 2.4e-120 436.0 305 67.9
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.4e-120 436.0 323 66.9
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 3.1e-120 435.6 305 69.5
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 4.0e-120 435.3 305 69.5
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.5e-119 433.3 310 68.1
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 1.5e-119 433.3 304 69.4
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 2.0e-119 433.0 305 69.2
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 3.4e-119 432.2 305 69.2
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 4.4e-119 431.8 310 68.4
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 4.4e-119 431.8 304 69.1
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 5.8e-119 431.4 305 67.2
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.3e-118 430.3 310 66.1
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.3e-118 430.3 310 66.1
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.7e-118 429.9 306 69.0
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 2.2e-118 429.5 306 69.9
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 8.4e-118 427.6 305 67.2
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.9e-117 426.4 305 68.2
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 3.2e-117 425.6 310 66.5
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 3.2e-117 425.6 308 68.8
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.2e-116 423.7 311 66.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.2e-116 423.7 305 67.9
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 3.0e-115 419.1 343 62.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 3.9e-115 418.7 328 61.6
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.9e-115 418.7 305 65.9
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 3.9e-115 418.7 305 65.9
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 3.1e-112 409.1 306 64.1
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.4e-111 405.2 240 80.8
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 3.2e-109 399.1 248 76.6
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.6e-108 396.7 244 77.5
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 6.0e-108 394.8 297 64.6
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 7.6e-103 377.9 309 61.2
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.6e-100 370.2 308 60.7
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 6.7e-99 364.8 249 71.5
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.1e-98 364.0 306 61.4
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 7.6e-95 351.3 241 68.9
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 7.1e-93 344.7 209 78.0
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 4.5e-87 325.5 300 55.3
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 8.4e-86 321.2 295 53.9
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 8.4e-86 321.2 228 68.4
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 7.7e-79 298.1 290 51.4
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.3e-78 297.4 292 52.1
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 8.8e-67 258.1 290 45.2
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.9e-61 240.4 147 76.9
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.5e-58 230.7 145 75.9
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 5.3e-56 222.2 318 42.1
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 5.9e-55 218.8 179 57.0
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.5e-53 214.2 289 39.1
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 4.8e-49 199.1 151 63.6
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 6.3e-41 172.2 184 56.0
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.4e-40 171.0 149 59.7
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 5.9e-39 165.6 149 57.0
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 3.1e-32 143.3 96 70.8
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 9.2e-32 141.7 97 70.1
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.9e-29 134.0 100 63.0
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.4e-24 117.1 66 81.8
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.5e-21 107.1 71 76.1
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.2e-18 98.2 71 62.0
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.3e-14 84.7 67 58.2
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.0e-14 83.6 59 64.4


User provided reference genes

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