Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G068700 Prunus persica HOM05D005130 ORTHO05D006185 1.6e-41 172.2 79 100.0
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 8.1e-33 143.3 78 89.7
Prupe.2G018100 Prunus persica HOM05D005130 ORTHO05D006185 8.1e-33 143.3 77 89.6
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 8.1e-33 143.3 78 89.7
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 6.8e-32 140.2 77 88.3
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 8.9e-32 139.8 78 87.2
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 8.9e-32 139.8 77 87.0
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 1.2e-31 139.4 78 87.2
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 1.2e-31 139.4 77 87.0
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 1.5e-31 139.0 77 87.0
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 1.5e-31 139.0 77 87.0
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 2.0e-31 138.7 77 87.0
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 2.0e-31 138.7 77 87.0
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 2.0e-31 138.7 77 87.0
Oeu040377.1 Olea europaea HOM05D005130 ORTHO05D006185 2.0e-31 138.7 77 87.0
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 3.4e-31 137.9 77 85.7
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
TPR.G4673 Trifolium pratense HOM05D005130 ORTHO05D006185 4.4e-31 137.5 77 85.7
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 5.8e-31 137.1 77 85.7
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 5.8e-31 137.1 77 85.7
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 5.8e-31 137.1 78 85.9
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 7.6e-31 136.7 77 85.7
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 7.6e-31 136.7 77 85.7
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 7.6e-31 136.7 77 85.7
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 7.6e-31 136.7 78 84.6
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 7.6e-31 136.7 77 83.1
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 9.9e-31 136.3 77 85.7
AUR62013718 Chenopodium quinoa HOM05D005130 ORTHO05D006185 1.3e-30 136.0 76 85.5
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 1.3e-30 136.0 77 84.4
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 1.7e-30 135.6 77 84.4
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 1.7e-30 135.6 77 84.4
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.7e-30 135.6 77 84.4
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 1.7e-30 135.6 77 84.4
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 1.7e-30 135.6 77 84.4
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 1.7e-30 135.6 77 84.4
Ah.05g173340 Amaranthus hybridus HOM05D005130 ORTHO05D006185 2.2e-30 135.2 77 83.1
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 2.2e-30 135.2 77 83.1
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 2.2e-30 135.2 77 85.7
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 2.2e-30 135.2 77 83.1
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.9e-30 134.8 93 73.1
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.9e-30 134.8 93 73.1
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 2.9e-30 134.8 77 81.8
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 3.8e-30 134.4 77 83.1
AUR62004123 Chenopodium quinoa HOM05D005130 ORTHO05D006185 3.8e-30 134.4 77 83.1
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 3.8e-30 134.4 77 84.4
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 4.9e-30 134.0 77 83.1
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 4.9e-30 134.0 77 84.4
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 6.4e-30 133.7 77 83.1
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 6.4e-30 133.7 77 83.1
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 6.4e-30 133.7 77 83.1
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 6.4e-30 133.7 77 83.1
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 8.4e-30 133.3 77 81.8
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 8.4e-30 133.3 76 82.9
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 8.4e-30 133.3 76 82.9
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 8.4e-30 133.3 77 83.1
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 8.4e-30 133.3 77 81.8
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 8.4e-30 133.3 77 81.8
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 8.4e-30 133.3 77 84.4
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 8.4e-30 133.3 77 84.4
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 1.1e-29 132.9 77 83.1
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 1.4e-29 132.5 77 81.8
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 1.4e-29 132.5 77 81.8
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 1.4e-29 132.5 77 83.1
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 1.4e-29 132.5 77 83.1
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 1.9e-29 132.1 77 81.8
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 2.4e-29 131.7 77 83.1
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 2.4e-29 131.7 77 81.8
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 2.4e-29 131.7 77 81.8
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 3.2e-29 131.3 76 84.2
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 3.2e-29 131.3 77 80.5
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 3.2e-29 131.3 77 80.5
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 4.1e-29 131.0 77 79.2
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 4.1e-29 131.0 77 79.2
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 4.1e-29 131.0 77 79.2
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 4.1e-29 131.0 77 79.2
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 4.1e-29 131.0 77 81.8
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 79.2
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 79.2
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 79.2
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 79.2
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 79.2
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 79.2
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 5.4e-29 130.6 77 77.9
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 79.2
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 79.2
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 79.2
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 79.2
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 80.5
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 79.2
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 7.1e-29 130.2 78 79.5
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 7.1e-29 130.2 77 81.8
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 9.2e-29 129.8 77 81.8
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 1.2e-28 129.4 77 79.2
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 1.2e-28 129.4 78 80.8
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 1.6e-28 129.0 77 79.2
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 2.1e-28 128.6 72 83.3
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 2.7e-28 128.3 77 76.6
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 2.7e-28 128.3 77 76.6
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 2.7e-28 128.3 77 79.2
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 2.7e-28 128.3 77 79.2
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 2.7e-28 128.3 77 77.9
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 3.5e-28 127.9 77 79.2
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 3.5e-28 127.9 77 79.2
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 3.5e-28 127.9 77 79.2
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 4.6e-28 127.5 77 77.9
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 1.0e-27 126.3 77 77.9
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 1.3e-27 125.9 110 59.1
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 2.3e-27 125.2 77 76.6
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 3.0e-27 124.8 74 81.1
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 1.1e-26 122.9 77 76.6
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 1.1e-26 122.9 77 76.6
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 1.1e-26 122.9 77 76.6
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 1.1e-26 122.9 77 76.6
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 1.1e-26 122.9 77 75.3
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 1.9e-26 122.1 77 76.6
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 2.5e-26 121.7 76 75.0
Eucgr.H04599 Eucalyptus grandis HOM05D005130 ORTHO05D006185 9.0e-24 113.2 102 58.8
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 3.4e-23 111.3 62 85.5
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 9.3e-21 103.2 78 61.5
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 6.0e-20 100.5 73 67.1
Ciclev10023954m.g Citrus clementina HOM05D005130 ORTHO05D006185 3.9e-19 97.8 77 66.2
C03p90030 Brassica napus HOM05D005130 ORTHO05D006185 2.8e-17 91.7 58 72.4
SMO203G0049 Selaginella moellendorffii HOM05D005130 ORTHO05D006185 2.4e-16 88.6 67 67.2
Prupe.2G055900 Prunus persica HOM05D005130 ORTHO05D006185 4.5e-15 84.3 50 86.0
Sabra17G0124900 Salix brachista HOM05D000100 ORTHO05D000052 4.5e-15 84.3 45 84.4
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 8.4e-14 80.1 41 87.8
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 3.5e-12 74.7 46 76.1
Cre06.g289700 Chlamydomonas reinhardtii HOM05D005130 ORTHO05D006185 2.3e-11 72.0 75 48.0
Haze_11084 Corylus avellana HOM05D005130 ORTHO05D006185 4.3e-10 67.8 34 88.2
Rhsim09G0201500 Rhododendron simsii HOM05D005130 ORTHO05D006185 4.3e-10 67.8 34 88.2
SGA_v2.0_scaffold52G19001 Striga asiatica HOM05D005130 ORTHO05D006185 4.3e-10 67.8 34 88.2
SHI13750 Sapria himalayana HOM05D005130 ORTHO05D006185 5.6e-10 67.4 40 72.5
COL.COLO4_25325 Corchorus olitorius HOM05D005130 ORTHO05D006185 7.4e-10 67.0 44 68.2
Psat7g198120 Pisum sativum HOM05D005130 ORTHO05D006185 9.6e-10 66.6 34 85.3
Actinidia31846 Actinidia chinensis HOM05D005130 ORTHO05D006185 2.1e-09 65.5 34 85.3
Pp3c12_8100 Physcomitrium patens HOM05D005130 ORTHO05D006185 2.4e-08 62.0 33 81.8


User provided reference genes

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