Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 7.5e-192 673.7 343 100.0
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 1.2e-138 496.9 354 75.7
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 3.4e-136 488.8 360 73.6
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 2.1e-93 346.7 343 58.0
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 3.9e-92 342.4 347 56.8
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 2.6e-91 339.7 347 55.6
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 4.4e-91 339.0 345 54.8
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 7.4e-91 338.2 377 54.6
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 6.3e-90 335.1 351 54.1
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 1.4e-89 334.0 351 55.0
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 3.1e-89 332.8 336 57.4
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 7.0e-89 331.6 348 56.0
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 3.2e-86 322.8 352 53.1
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 1.2e-85 320.9 350 53.7
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.2e-85 320.9 325 58.2
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 1.6e-85 320.5 354 54.5
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 4.7e-85 318.9 348 54.9
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 6.1e-85 318.5 346 51.4
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 2.3e-84 316.6 349 55.0
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.3e-84 316.6 351 51.9
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 3.0e-84 316.2 351 51.6
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 5.2e-84 315.5 346 51.7
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.5e-83 313.9 351 51.6
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 2.0e-83 313.5 346 52.6
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 3.3e-83 312.8 356 52.5
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 3.3e-83 312.8 346 50.9
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 4.4e-83 312.4 356 52.8
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 9.7e-83 311.2 357 52.4
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 4.8e-82 308.9 356 53.9
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 4.8e-82 308.9 346 53.2
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 6.3e-82 308.5 348 51.1
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 1.8e-81 307.0 343 51.0
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 7.0e-81 305.1 345 51.0
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 7.0e-81 305.1 345 51.0
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 9.1e-81 304.7 354 50.8
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 9.1e-81 304.7 351 50.7
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 1.2e-80 304.3 350 49.4
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.6e-80 303.9 346 50.6
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 2.0e-80 303.5 347 52.7
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 5.9e-80 302.0 361 51.2
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 5.9e-80 302.0 348 53.4
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 5.9e-80 302.0 350 49.7
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 5.9e-80 302.0 369 49.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 1.3e-79 300.8 346 51.4
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.7e-79 300.4 355 51.8
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 5.0e-79 298.9 256 61.3
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.1e-78 297.7 347 53.3
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 1.1e-78 297.7 349 49.9
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.5e-78 297.4 352 50.9
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 1.5e-78 297.4 353 52.1
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 2.5e-78 296.6 352 49.1
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 3.2e-78 296.2 352 50.6
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 4.2e-78 295.8 354 49.7
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 1.2e-77 294.3 354 49.7
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.2e-77 294.3 355 51.3
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 2.1e-77 293.5 356 50.0
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 2.7e-77 293.1 346 50.0
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 1.5e-75 287.3 352 50.0
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 7.5e-75 285.0 354 46.6
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 7.5e-75 285.0 351 46.7
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 9.7e-75 284.6 353 48.2
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 1.3e-74 284.3 381 47.2
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 1.1e-73 281.2 354 47.2
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 1.8e-73 280.4 354 47.2
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 4.1e-73 279.3 326 49.7
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 1.6e-72 277.3 358 48.9
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 2.7e-72 276.6 353 48.2
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 4.5e-72 275.8 352 47.4
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.0e-71 274.6 350 45.4
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.0e-71 274.6 396 44.4
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 2.2e-71 273.5 354 45.5
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 2.2e-71 273.5 328 49.4
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 2.2e-71 273.5 320 48.4
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.9e-70 270.4 323 45.5
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 5.5e-70 268.9 353 44.8
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.6e-69 267.3 328 48.5
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 3.0e-68 263.1 339 45.4
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 4.0e-68 262.7 358 43.9
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 9.8e-67 258.1 338 44.4
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 2.8e-66 256.5 323 48.0
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 4.8e-66 255.8 371 43.1
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 7.0e-65 251.9 376 42.8
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 3.5e-64 249.6 360 42.8
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 4.5e-64 249.2 304 49.7
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 5.9e-64 248.8 374 42.8
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 5.0e-63 245.7 378 41.3
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.1e-62 244.6 332 45.5
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 7.2e-62 241.9 359 41.5
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 7.2e-62 241.9 358 41.9
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 8.0e-61 238.4 317 44.2
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.0e-60 238.0 317 44.2
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.3e-60 236.9 332 45.2
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 4.0e-60 236.1 332 45.2
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 5.2e-60 235.7 334 44.3
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 5.2e-60 235.7 274 52.6
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 3.7e-58 229.6 257 48.2
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.1e-57 228.0 257 47.9
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 7.0e-57 225.3 243 47.3
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 3.5e-56 223.0 333 43.2
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 1.4e-52 211.1 326 43.3
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 2.3e-47 193.7 178 56.2
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 1.4e-44 184.5 192 51.6
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 5.2e-44 182.6 355 37.7
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 4.4e-43 179.5 333 37.8
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 9.2e-41 171.8 350 35.4
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.6e-40 171.0 354 36.4
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 9.5e-38 161.8 177 47.5
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.2e-37 161.4 241 39.0
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.9e-34 150.2 206 43.2
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.9e-34 150.2 203 41.4
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.4e-34 149.1 206 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 4.1e-33 146.4 217 39.2
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 7.1e-33 145.6 255 32.9
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-32 144.8 223 39.9
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 7.8e-32 142.1 224 40.2
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.0e-31 141.7 203 40.4
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.9e-31 139.8 210 37.1
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.3e-30 136.7 220 38.6
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.6e-29 134.4 214 41.6
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 5.8e-27 125.9 120 56.7
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 3.0e-23 113.6 118 55.1
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.9e-22 110.9 286 30.1
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 1.8e-20 104.4 85 61.2
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 2.6e-19 100.5 163 36.2
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 2.1e-16 90.9 128 42.2


User provided reference genes

Program Settings