Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G067300 Prunus persica HOM05D007039 ORTHO05D008886 1.5e-138 496.1 243 100.0
MD02G1261300 Malus domestica HOM05D007039 ORTHO05D008886 8.0e-124 447.2 241 90.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.0e-114 416.0 241 81.3
Rhsim09G0142000 Rhododendron simsii HOM05D007039 ORTHO05D008886 9.9e-114 413.7 241 81.3
CiPaw.14G032800 Carya illinoinensis HOM05D007039 ORTHO05D008886 6.4e-113 411.0 241 81.3
Oeu025598.1 Olea europaea HOM05D007039 ORTHO05D008886 1.9e-112 409.5 241 82.6
TWI63G1767 Tripterygium wilfordii HOM05D007039 ORTHO05D008886 6.0e-111 404.4 237 81.0
MD07G1059500 Malus domestica HOM05D007039 ORTHO05D008886 1.0e-110 403.7 241 83.0
Eucgr.J00258 Eucalyptus grandis HOM05D007039 ORTHO05D008886 1.3e-110 403.3 242 78.1
Manes.07G087400 Manihot esculenta HOM05D007039 ORTHO05D008886 1.7e-110 402.9 243 79.0
Lj2A32T31 Lonicera japonica HOM05D007039 ORTHO05D008886 3.9e-110 401.7 240 80.8
RcHm_v2.0_Chr1g0331721 Rosa chinensis HOM05D007039 ORTHO05D008886 3.9e-110 401.7 242 81.4
Dinv11837 Davidia involucrata HOM05D007039 ORTHO05D008886 5.1e-110 401.4 241 80.5
GSVIVG01001001001 Vitis vinifera HOM05D007039 ORTHO05D008886 8.6e-110 400.6 241 78.4
CANSAT56G1368 Cannabis sativa HOM05D007039 ORTHO05D008886 3.3e-109 398.7 236 80.1
FAN06G3803 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.6e-108 396.4 242 80.2
Cc02_g09650 Coffea canephora HOM05D007039 ORTHO05D008886 2.1e-108 396.0 241 77.2
FAN01G2006 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.1e-107 393.7 242 80.2
FAN03G1588 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.8e-107 392.9 242 78.9
HanXRQChr08g0217501 Helianthus annuus HOM05D007039 ORTHO05D008886 6.8e-107 391.0 237 78.9
Migut.F00878 Erythranthe guttata HOM05D007039 ORTHO05D008886 4.4e-106 388.3 240 77.1
CSS0047124 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 7.6e-106 387.5 240 76.2
Lsat_1_v5_gn_8_24101 Lactuca sativa HOM05D007039 ORTHO05D008886 9.9e-106 387.1 242 76.4
Sabra10G0186900 Salix brachista HOM05D007039 ORTHO05D008886 9.9e-106 387.1 241 75.9
CSS0023700 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 1.3e-105 386.7 240 77.5
Potri.010G238700 Populus trichocarpa HOM05D007039 ORTHO05D008886 1.7e-105 386.3 241 76.3
PGSC0003DMG400016998 Solanum tuberosum HOM05D007039 ORTHO05D008886 3.8e-105 385.2 237 78.1
vmacro10308 Vaccinium macrocarpon HOM05D007039 ORTHO05D008886 3.8e-105 385.2 287 67.2
Atru.chr12.1023 Acer truncatum HOM05D007039 ORTHO05D008886 1.1e-104 383.6 241 75.9
Sopen04g004820 Solanum pennellii HOM05D007039 ORTHO05D008886 1.9e-104 382.9 237 77.6
SalBow6G1307 Salvia bowleyana HOM05D007039 ORTHO05D008886 7.1e-104 380.9 242 75.2
Solyc04g009700.3 Solanum lycopersicum HOM05D007039 ORTHO05D008886 9.2e-104 380.6 237 76.8
FAN10G1571 Fragaria x ananassa HOM05D007039 ORTHO05D008886 1.2e-103 380.2 256 75.0
arahy.Tifrunner.gnm1.ann1.XC1RGZ Arachis hypogaea HOM05D007039 ORTHO05D008886 1.6e-103 379.8 240 75.0
Oeu036842.1 Olea europaea HOM05D007039 ORTHO05D008886 3.5e-103 378.6 241 76.3
CAN.G186.55 Capsicum annuum HOM05D007039 ORTHO05D008886 7.8e-103 377.5 237 76.4
Ciclev10016452m.g Citrus clementina HOM05D007039 ORTHO05D008886 7.8e-103 377.5 240 74.6
arahy.Tifrunner.gnm1.ann1.2NV5LW Arachis hypogaea HOM05D007039 ORTHO05D008886 1.0e-102 377.1 240 74.6
SGA_v2.0_scaffold62G21336 Striga asiatica HOM05D007039 ORTHO05D008886 1.3e-102 376.7 242 74.0
Ca_25665_v3 Cicer arietinum L. HOM05D007039 ORTHO05D008886 1.7e-102 376.3 241 76.3
Thecc.07G140700 Theobroma cacao HOM05D007039 ORTHO05D008886 1.7e-102 376.3 241 73.4
QL04p044873 Quercus lobata HOM05D007039 ORTHO05D008886 3.9e-102 375.2 242 74.8
Lalb_Chr06g0166411 Lupinus albus HOM05D007039 ORTHO05D008886 1.5e-101 373.2 241 73.4
Lj5g0024269 Lotus japonicus HOM05D007039 ORTHO05D008886 4.3e-101 371.7 237 75.9
Glyma.20G110700 Glycine max HOM05D007039 ORTHO05D008886 5.6e-101 371.3 241 74.3
TPR.G2471 Trifolium pratense HOM05D007039 ORTHO05D008886 1.6e-100 369.8 237 74.3
Hund22275 Selenicereus undatus HOM05D007039 ORTHO05D008886 1.4e-99 366.7 238 71.8
TAR623G0720 Trochodendron aralioides HOM05D007039 ORTHO05D008886 1.4e-99 366.7 241 73.9
Psat6g231000 Pisum sativum HOM05D007039 ORTHO05D008886 1.8e-99 366.3 237 75.9
Medtr1g112080 Medicago truncatula HOM05D007039 ORTHO05D008886 3.1e-99 365.5 237 74.7
THA.LOC104801579 Tarenaya hassleriana HOM05D007039 ORTHO05D008886 6.9e-99 364.4 243 70.8
VMungo0720G0617 Vigna mungo HOM05D007039 ORTHO05D008886 9.0e-99 364.0 241 71.4
COL.COLO4_17444 Corchorus olitorius HOM05D007039 ORTHO05D008886 1.5e-98 363.2 241 71.8
Duzib106G1061 Durio zibethinus HOM05D007039 ORTHO05D008886 2.0e-98 362.8 242 69.8
Phvul.007G022300 Phaseolus vulgaris HOM05D007039 ORTHO05D008886 2.6e-98 362.5 241 71.0
Potri.008G020500 Populus trichocarpa HOM05D007039 ORTHO05D008886 2.6e-98 362.5 236 72.9
Gohir.A06G173100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.7e-97 359.8 241 71.8
Sc20g0001160 Simmondsia chinensis HOM05D007039 ORTHO05D008886 2.2e-97 359.4 237 71.7
Gorai.010G214000 Gossypium raimondii HOM05D007039 ORTHO05D008886 3.8e-97 358.6 241 71.8
Gohir.D06G182700 Gossypium hirsutum HOM05D007039 ORTHO05D008886 4.9e-97 358.2 241 71.8
Gorai.010G214100 Gossypium raimondii HOM05D007039 ORTHO05D008886 6.4e-97 357.8 241 71.8
Gohir.D06G183100 Gossypium hirsutum HOM05D007039 ORTHO05D008886 1.9e-96 356.3 241 71.8
EL10Ac4g08687 Beta vulgaris HOM05D007039 ORTHO05D008886 5.4e-96 354.8 237 71.3
AUR62041513 Chenopodium quinoa HOM05D007039 ORTHO05D008886 1.6e-95 353.2 240 68.3
Gohir.D06G183000 Gossypium hirsutum HOM05D007039 ORTHO05D008886 2.1e-95 352.8 241 71.0
unitig_748.g8774 Utricularia gibba HOM05D007039 ORTHO05D008886 1.1e-93 347.1 240 68.8
Nn6g34917 Nelumbo nucifera HOM05D007039 ORTHO05D008886 1.6e-92 343.2 241 68.0
AUR62042080 Chenopodium quinoa HOM05D007039 ORTHO05D008886 2.8e-92 342.4 221 70.1
Sed0014501 Sechium edule HOM05D007039 ORTHO05D008886 1.1e-91 340.5 240 69.2
Ah.06g186600 Amaranthus hybridus HOM05D007039 ORTHO05D008886 1.4e-91 340.1 240 67.9
MELO3C019894.2 Cucumis melo HOM05D007039 ORTHO05D008886 1.8e-91 339.7 240 68.8
Peaxi162Scf00195g01020 Petunia axillaris HOM05D007039 ORTHO05D008886 2.4e-91 339.3 242 70.2
Nitab4.5_0003927g0060 Nicotiana tabacum HOM05D007039 ORTHO05D008886 3.1e-91 339.0 242 70.7
Aqoxy2G01207 Aquilegia oxysepala HOM05D007039 ORTHO05D008886 4.0e-91 338.6 237 67.9
PSO384G1372 Papaver somniferum HOM05D007039 ORTHO05D008886 3.4e-90 335.5 239 66.9
ClCG08G008260 Citrullus lanatus HOM05D007039 ORTHO05D008886 4.5e-90 335.1 275 62.2
PSO339G1176 Papaver somniferum HOM05D007039 ORTHO05D008886 1.3e-89 333.6 239 66.5
Os01g0859400 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 2.9e-89 332.4 242 65.3
TAR633G1803 Trochodendron aralioides HOM05D007039 ORTHO05D008886 7.1e-88 327.8 236 65.7
Dinv09617 Davidia involucrata HOM05D007039 ORTHO05D008886 4.6e-87 325.1 241 70.1
HPP92_006806 Vanilla planifolia HOM05D007039 ORTHO05D008886 4.6e-87 325.1 236 64.0
Zm00001eb147230 Zea mays HOM05D007039 ORTHO05D008886 5.1e-86 321.6 242 63.2
Zm00001eb366890 Zea mays HOM05D007039 ORTHO05D008886 5.6e-85 318.2 242 63.2
Cpa.g.sc56.15 Carica papaya HOM05D007039 ORTHO05D008886 9.6e-85 317.4 185 78.4
ECA233G2799 Erigeron canadensis HOM05D007039 ORTHO05D008886 1.3e-81 307.0 185 79.5
HPP92_009768 Vanilla planifolia HOM05D007039 ORTHO05D008886 1.4e-75 287.0 232 57.3
FvH4_7g05130 Fragaria vesca HOM05D007039 ORTHO05D008886 2.4e-75 286.2 182 77.5
HPP92_009745 Vanilla planifolia HOM05D007039 ORTHO05D008886 2.4e-75 286.2 232 56.9
Eucgr.J00257 Eucalyptus grandis HOM05D007039 ORTHO05D008886 6.9e-75 284.6 182 74.7
Glyma.10G279000 Glycine max HOM05D007039 ORTHO05D008886 1.2e-74 283.9 237 62.0
PGSC0003DMG400023289 Solanum tuberosum HOM05D007039 ORTHO05D008886 1.5e-74 283.5 183 73.8
Oeu036841.1 Olea europaea HOM05D007039 ORTHO05D008886 2.6e-74 282.7 182 74.7
MSTRG.9060 Avicennia marina HOM05D007039 ORTHO05D008886 3.4e-74 282.3 182 71.4
PGR142G0235 Punica granatum HOM05D007039 ORTHO05D008886 4.6e-71 271.9 181 71.3
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.8e-68 262.7 187 69.0
CsaV3_6G004220 Cucumis sativus L. HOM05D007039 ORTHO05D008886 2.6e-66 256.1 180 67.8
Zm00001eb092690 Zea mays HOM05D007039 ORTHO05D008886 4.5e-66 255.4 232 50.9
Os12g0152800 Oryza sativa ssp. japonica HOM05D007039 ORTHO05D008886 1.7e-65 253.4 235 50.2
Mapoly0010s0050 Marchantia polymorpha HOM05D007039 ORTHO05D008886 1.9e-64 250.0 239 49.4
CSS0041399 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 2.3e-62 243.0 178 69.1
SMO367G0592 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 3.1e-59 232.6 229 50.2
Pp3c15_5790 Physcomitrium patens HOM05D007039 ORTHO05D008886 5.5e-56 221.9 230 46.5
CBR_g32363 Chara braunii HOM05D007039 ORTHO05D008886 1.1e-53 214.2 205 49.8
AagrBONN_evm.TU.Sc2ySwM_362.1562 Anthoceros agrestis HOM05D007039 ORTHO05D008886 1.5e-53 213.8 240 42.9
AagrBONN_evm.TU.Sc2ySwM_228.3073 Anthoceros agrestis HOM05D007039 ORTHO05D008886 2.4e-51 206.5 215 46.5
CDE08G0883 Ceratophyllum demersum HOM05D007039 ORTHO05D008886 2.2e-49 199.9 147 57.8
DCAR_019005 Daucus carota HOM05D007039 ORTHO05D008886 2.5e-48 196.4 109 78.9
Zm00001eb197030 Zea mays HOM05D007039 ORTHO05D008886 1.3e-44 184.1 179 46.4
Nitab4.5_0000691g0070 Nicotiana tabacum HOM05D007039 ORTHO05D008886 1.4e-38 164.1 241 43.6
SMO353G0277 Selaginella moellendorffii HOM05D007039 ORTHO05D008886 1.2e-37 161.0 183 47.0
MD04G1248500 Malus domestica HOM05D007039 ORTHO05D008886 1.4e-35 154.1 106 76.4
Cre01.g018100 Chlamydomonas reinhardtii HOM05D007039 ORTHO05D008886 1.9e-32 143.7 207 37.2
PRCOL_00002076 Prasinoderma coloniale HOM05D007039 ORTHO05D008886 7.7e-26 121.7 241 30.7


User provided reference genes

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