Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 6.2e-176 622.1 307 100.0
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 7.7e-126 455.7 302 74.5
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.6e-118 431.4 309 71.8
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.2e-115 421.8 306 69.9
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 2.1e-115 421.0 306 69.9
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.3e-114 417.5 305 69.5
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 8.9e-114 415.6 308 68.2
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 1.8e-106 391.3 311 63.3
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 5.2e-106 389.8 311 63.7
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 3.0e-101 374.0 311 59.5
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 1.1e-100 372.1 308 61.7
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.9e-100 371.3 224 82.1
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 1.6e-99 368.2 308 59.7
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 1.8e-98 364.8 303 60.4
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 1.3e-93 348.6 309 61.2
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 6.6e-93 346.3 297 59.3
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 1.1e-92 345.5 297 58.9
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 1.1e-92 345.5 311 54.7
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 1.1e-92 345.5 303 59.7
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 8.9e-90 335.9 307 56.4
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.2e-89 335.5 309 55.7
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 1.5e-89 335.1 312 53.8
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.0e-89 334.7 307 57.3
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 2.0e-89 334.7 299 56.2
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 2.2e-88 331.3 313 55.3
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 2.9e-88 330.9 306 57.2
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 2.4e-87 327.8 302 57.0
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 8.7e-85 319.3 312 52.6
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.3e-83 315.5 307 55.4
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 1.4e-82 312.0 308 53.2
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 2.0e-81 308.1 313 52.4
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 3.9e-77 293.9 319 47.6
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 5.3e-74 283.5 286 50.3
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 9.9e-73 279.3 296 49.0
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 1.1e-71 275.8 258 55.0
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 1.9e-71 275.0 303 46.2
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 4.2e-71 273.9 312 45.5
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 4.2e-71 273.9 304 49.0
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 1.2e-70 272.3 328 45.4
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 1.8e-66 258.5 300 48.3
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 6.9e-66 256.5 296 47.3
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 3.4e-65 254.2 305 43.0
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 4.5e-65 253.8 266 48.1
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 7.6e-65 253.1 305 43.6
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 2.9e-64 251.1 153 79.1
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 8.4e-64 249.6 282 50.0
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 7.9e-62 243.0 228 54.8
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 9.6e-60 236.1 275 49.8
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 3.7e-59 234.2 281 44.5
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 6.3e-59 233.4 281 44.1
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 2.4e-58 231.5 284 45.8
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 3.1e-58 231.1 274 47.4
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 3.8e-56 224.2 279 43.4
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 5.0e-56 223.8 265 47.5
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 6.5e-56 223.4 275 44.0
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 1.3e-53 215.7 282 44.7
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 3.0e-53 214.5 284 41.5
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 5.1e-53 213.8 284 41.2
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 1.1e-52 212.6 279 41.2
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.6e-51 208.8 258 44.6
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 2.4e-50 204.9 201 51.2
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 3.8e-48 197.6 279 39.8
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 5.7e-44 183.7 208 45.7
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 5.3e-42 177.2 185 44.9
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 5.0e-40 170.6 126 69.0
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 1.5e-36 159.1 122 64.8
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 6.3e-35 153.7 123 59.3
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 1.8e-34 152.1 161 46.0
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 7.0e-34 150.2 123 59.3
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 4.5e-33 147.5 180 46.1
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 7.7e-33 146.7 152 46.1
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 2.9e-32 144.8 149 48.3
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 2.5e-31 141.7 130 53.8
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 3.2e-31 141.4 119 57.1
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 1.2e-30 139.4 119 58.0
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 4.7e-30 137.5 207 38.2
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 2.2e-27 128.6 112 57.1
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.1e-26 126.3 125 53.6
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 5.3e-26 124.0 150 42.7
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 1.5e-23 115.9 189 32.8
Cpa.g.sc998.1 Carica papaya HOM05D007623 ORTHO05D021352 3.2e-23 114.8 82 64.6
Prupe.7G020200 Prunus persica HOM05D030010 ORTHO05D021352 2.7e-22 111.7 62 85.5
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 7.5e-20 103.6 95 56.8
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 1.3e-19 102.8 122 47.5
Eucgr.I00129 Eucalyptus grandis HOM05D007623 ORTHO05D009641 3.1e-18 98.2 81 58.0
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.5e-15 89.4 139 35.3
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.5e-15 88.6 231 25.5
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 3.6e-14 84.7 138 39.1
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 6.1e-14 84.0 232 25.4
Prupe.2G062200 Prunus persica HOM05D030010 ORTHO05D021352 1.4e-13 82.8 82 57.3
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.3e-13 82.0 218 28.0
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 5.2e-13 80.9 258 23.6
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 8.8e-13 80.1 211 25.1
Solyc05g010780.1 Solanum lycopersicum HOM05D007623 ORTHO05D009641 8.8e-13 80.1 76 53.9
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.0e-12 79.0 259 22.4
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.0e-12 79.0 209 27.3
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.6e-12 78.6 209 26.3
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 3.4e-12 78.2 259 22.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 7.5e-12 77.0 219 25.6
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 7.5e-12 77.0 145 37.2
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 9.8e-12 76.6 232 25.0
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 1.3e-11 76.3 234 24.4
Potri.010G137200 Populus trichocarpa HOM05D007623 ORTHO05D009641 1.7e-11 75.9 59 57.6
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 2.2e-11 75.5 230 24.8
Aqoxy1G02998 Aquilegia oxysepala HOM05D007623 ORTHO05D021352 6.3e-11 73.9 75 53.3
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 6.3e-11 73.9 164 25.0
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 6.3e-11 73.9 200 24.0
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 6.3e-11 73.9 234 23.9
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 6.3e-11 73.9 219 24.2
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 8.3e-11 73.6 199 28.6
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.4e-10 72.8 219 24.2
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 2.4e-10 72.0 204 25.0
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 3.1e-10 71.6 192 27.6
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 5.4e-10 70.9 159 27.0
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 9.2e-10 70.1 217 24.0
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.2e-09 69.7 226 24.8
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.6e-09 69.3 165 25.5
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 1.6e-09 69.3 183 24.6
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 2.7e-09 68.6 188 22.3
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.5e-09 68.2 213 25.4
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 4.5e-09 67.8 192 27.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.7e-09 67.0 217 23.5
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 7.7e-09 67.0 201 24.4
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 1.0e-08 66.6 183 24.6
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 1.0e-08 66.6 183 24.6
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 1.0e-08 66.6 204 20.6
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 1.0e-08 66.6 222 27.9
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 1.7e-08 65.9 183 24.0
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.7e-08 65.9 222 27.5
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 3.8e-08 64.7 163 25.8
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 6.6e-08 63.9 194 27.3
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 1.1e-07 63.2 213 23.9
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.9e-07 62.4 214 22.9
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 2.5e-07 62.0 183 23.5
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 2.5e-07 62.0 147 27.9
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 3.3e-07 61.6 161 25.5
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 3.3e-07 61.6 161 25.5
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.6e-07 60.8 213 25.4
Nn4g24966 Nelumbo nucifera HOM05D007639 ORTHO05D009509 5.6e-07 60.8 143 30.1
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 7.3e-07 60.5 161 26.1
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 9.5e-07 60.1 183 23.5
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 9.5e-07 60.1 132 28.8
Lsat_1_v5_gn_3_22340 Lactuca sativa HOM05D007623 ORTHO05D009641 9.5e-07 60.1 55 52.7
PSO675G4860 Papaver somniferum HOM05D007639 ORTHO05D009509 9.5e-07 60.1 121 29.8
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.2e-06 59.7 165 24.2
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 1.2e-06 59.7 150 25.3
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 1.2e-06 59.7 229 26.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.6e-06 59.3 132 28.0
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 1.6e-06 59.3 161 25.5
PGR031G3090 Punica granatum HOM05D007639 ORTHO05D009509 2.8e-06 58.5 172 27.3
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.8e-06 58.5 158 24.1
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 3.6e-06 58.2 157 24.2
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 3.6e-06 58.2 193 25.9
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 3.6e-06 58.2 171 25.7
QL09p028535 Quercus lobata HOM05D007639 ORTHO05D009509 3.6e-06 58.2 198 25.3
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 4.7e-06 57.8 237 25.7
Lalb_Chr23g0275911 Lupinus albus HOM05D007639 ORTHO05D009509 4.7e-06 57.8 143 28.7
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 6.1e-06 57.4 135 31.1
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 6.1e-06 57.4 178 21.3
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.1e-06 57.4 111 29.7
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 8.0e-06 57.0 211 23.2
Ciclev10003562m.g Citrus clementina HOM05D007639 ORTHO05D009509 8.0e-06 57.0 121 28.1


User provided reference genes

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