Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.3e-252 875.9 458 100.0
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.9e-203 712.6 456 84.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 6.2e-202 707.6 456 82.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.4e-164 583.6 463 70.2
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-159 567.0 463 68.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-158 563.5 463 67.6
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.8e-156 556.6 463 67.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 6.7e-156 554.7 477 63.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 9.1e-153 544.3 478 63.4
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.8e-151 538.9 477 62.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.2e-149 533.9 474 63.1
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.1e-149 533.1 472 63.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.7e-149 531.9 469 62.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 6.1e-149 531.6 477 61.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.7e-146 522.3 463 62.4
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.3e-146 521.5 463 65.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.1e-145 520.8 459 62.5
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 4.1e-145 518.8 468 62.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.0e-144 516.5 464 62.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.5e-144 515.8 468 61.8
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 3.5e-144 515.8 472 60.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 4.5e-144 515.4 472 61.0
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.5e-144 515.4 472 60.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.5e-144 515.4 472 60.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 5.9e-144 515.0 473 63.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.7e-144 514.6 471 61.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.0e-143 514.2 471 60.9
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.7e-143 513.5 475 60.8
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.8e-143 512.3 463 62.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 8.6e-143 511.1 471 60.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.2e-142 509.2 472 62.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 7.2e-142 508.1 470 62.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.5e-139 498.0 467 58.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-138 496.1 467 58.9
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.8e-138 496.1 477 58.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.1e-137 494.2 472 58.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.1e-137 494.2 462 59.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.4e-137 493.8 475 58.5
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.1e-137 492.3 474 58.9
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.4e-137 491.9 477 59.7
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.4e-137 491.9 473 60.7
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.2e-136 490.7 473 59.2
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.5e-136 488.8 466 57.5
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.9e-136 488.4 465 60.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.3e-135 487.3 476 60.1
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.8e-135 485.7 462 59.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.8e-135 485.7 462 59.7
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 8.6e-135 484.6 596 49.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 4.3e-134 482.3 465 58.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.3e-134 481.5 471 59.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.3e-132 476.5 475 57.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.0e-132 476.1 462 59.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 6.8e-132 474.9 479 56.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.5e-131 473.8 470 58.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 7.5e-131 471.5 470 57.4
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 7.5e-131 471.5 477 57.9
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.2e-130 469.9 473 57.3
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 5.4e-129 465.3 466 57.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-128 464.2 473 56.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.1e-126 457.6 468 56.4
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.1e-126 457.6 494 52.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 3.7e-122 442.6 463 56.6
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 4.9e-122 442.2 534 50.9
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.6e-120 435.6 477 54.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 7.3e-118 428.3 469 54.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.6e-117 426.0 475 51.2
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.1e-117 424.9 474 53.4
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 3.1e-116 422.9 484 53.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.1e-116 422.9 466 53.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 8.9e-116 421.4 377 59.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.0e-115 420.2 481 52.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.0e-115 420.2 444 57.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.6e-115 419.9 470 52.3
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 4.4e-115 419.1 473 52.2
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.7e-114 417.2 467 51.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.9e-114 416.4 473 53.3
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.9e-114 416.4 460 52.8
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 6.4e-114 415.2 472 53.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.4e-114 415.2 428 57.9
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 8.3e-114 414.8 472 53.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.1e-113 412.5 477 53.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.1e-113 412.5 477 52.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 5.4e-113 412.1 477 53.0
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 7.1e-113 411.8 469 51.8
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.5e-112 409.5 471 51.4
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.5e-112 409.5 471 51.4
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 7.8e-112 408.3 502 48.6
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 7.8e-112 408.3 468 50.9
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 6.6e-111 405.2 350 62.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.1e-110 404.4 473 51.6
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.5e-110 404.1 484 51.4
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 3.3e-110 402.9 469 50.3
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 4.3e-110 402.5 484 51.4
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 7.3e-110 401.7 473 51.6
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 7.3e-110 401.7 476 50.2
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.3e-110 401.7 467 51.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 9.5e-110 401.4 473 49.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.5e-110 401.4 470 50.6
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.7e-109 399.1 477 49.9
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 6.2e-109 398.7 469 50.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 8.1e-109 398.3 465 49.5
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.4e-108 396.7 474 50.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.8e-108 395.2 367 61.6
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-107 394.0 456 51.1
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 4.4e-107 392.5 468 52.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.4e-105 387.5 456 50.7
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 3.2e-105 386.3 489 47.6
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 7.1e-105 385.2 465 48.4
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 5.1e-103 379.0 530 46.4
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.1e-103 379.0 471 48.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 5.6e-102 375.6 466 49.6
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-101 374.4 463 48.4
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.6e-101 372.9 480 47.3
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 6.2e-101 372.1 491 48.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.4e-100 370.2 460 48.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.5e-99 367.5 451 49.7
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-99 367.1 454 50.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.0e-99 367.1 468 49.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.4e-99 366.3 448 47.3
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.4e-99 365.9 461 48.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.1e-97 358.6 460 48.0
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.5e-96 356.3 280 65.7
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.3e-95 354.4 408 49.8
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-94 351.3 454 46.5
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.9e-94 350.5 312 59.9
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.2e-90 337.0 374 54.8
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.9e-88 328.6 445 45.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.1e-87 325.9 413 45.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.2e-85 318.9 367 48.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.4e-84 317.8 452 44.7
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 6.9e-84 315.5 393 49.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.2e-83 314.7 377 48.8
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 2.0e-83 313.9 456 43.9
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 5.8e-83 312.4 415 45.8
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 7.6e-83 312.0 430 47.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.1e-77 293.9 353 47.9
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 3.7e-77 293.1 376 50.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 4.0e-76 289.7 353 49.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 7.6e-75 285.4 368 46.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-73 281.6 313 51.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.6e-72 277.7 372 44.9
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-72 276.6 370 48.4
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.3e-71 273.9 244 59.4
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.2e-69 267.3 209 64.6
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.7e-69 266.5 313 47.9
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.1e-68 263.1 313 47.6
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.6e-67 258.8 306 47.7
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 3.2e-65 253.4 458 38.2
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.0e-63 248.4 368 43.2
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.0e-59 234.2 339 45.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.7e-58 231.1 351 43.3
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 9.4e-57 225.3 142 77.5
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.3e-55 220.7 358 39.7
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.8e-55 218.8 460 35.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-54 217.6 292 42.8
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 2.8e-53 213.8 400 36.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 4.8e-53 213.0 278 45.0
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.0e-50 205.3 199 57.3
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.1e-49 201.8 239 46.4
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-48 197.2 226 50.9
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.4e-46 189.9 261 46.4
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.8e-45 187.2 410 34.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.9e-43 179.5 316 38.3
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 6.3e-37 159.5 136 60.3
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-36 158.7 100 78.0
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.1e-33 148.7 206 47.6
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-32 144.4 168 48.2
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.7e-27 127.5 73 83.6
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.8e-26 123.6 102 57.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.2e-23 113.2 82 68.3
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.0e-22 111.3 188 41.5
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 5.7e-22 109.8 192 37.5
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.9e-21 106.7 85 63.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 4.9e-21 106.7 196 36.2
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.8e-20 104.8 81 61.7
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.7e-18 98.2 123 46.3
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 5.2e-15 86.7 57 75.4
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.0e-10 70.9 52 65.4
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 3.1e-07 60.8 34 79.4
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 4.4e-06 57.0 222 26.1


User provided reference genes

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