Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G055900 Prunus persica HOM05D005130 ORTHO05D006185 8.6e-31 136.3 69 100.0
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 2.4e-17 91.7 56 82.1
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 3.2e-17 91.3 47 93.6
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 3.2e-17 91.3 47 93.6
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 3.2e-17 91.3 47 93.6
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 3.2e-17 91.3 47 93.6
AUR62013718 Chenopodium quinoa HOM05D005130 ORTHO05D006185 4.2e-17 90.9 56 76.8
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 4.2e-17 90.9 56 80.4
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 4.2e-17 90.9 47 91.5
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 4.2e-17 90.9 47 91.5
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 4.2e-17 90.9 47 91.5
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 4.2e-17 90.9 47 91.5
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 5.4e-17 90.5 47 91.5
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 7.1e-17 90.1 47 91.5
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 7.1e-17 90.1 56 78.6
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 7.1e-17 90.1 56 78.6
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 7.1e-17 90.1 62 74.2
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 9.3e-17 89.7 48 87.5
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 9.3e-17 89.7 48 87.5
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 9.3e-17 89.7 48 87.5
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 9.3e-17 89.7 47 91.5
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 9.3e-17 89.7 47 91.5
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 9.3e-17 89.7 47 91.5
Oeu040377.1 Olea europaea HOM05D005130 ORTHO05D006185 9.3e-17 89.7 47 91.5
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 9.3e-17 89.7 56 78.6
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 1.2e-16 89.4 47 91.5
Prupe.2G018100 Prunus persica HOM05D005130 ORTHO05D006185 1.2e-16 89.4 48 91.7
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 1.2e-16 89.4 47 89.4
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 1.6e-16 89.0 56 76.8
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 1.6e-16 89.0 47 89.4
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 1.6e-16 89.0 47 91.5
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 1.6e-16 89.0 56 76.8
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 1.6e-16 89.0 56 76.8
TPR.G4673 Trifolium pratense HOM05D005130 ORTHO05D006185 1.6e-16 89.0 56 76.8
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 2.1e-16 88.6 47 89.4
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 2.1e-16 88.6 47 89.4
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 2.1e-16 88.6 47 89.4
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 2.1e-16 88.6 56 76.8
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 2.1e-16 88.6 47 89.4
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 2.1e-16 88.6 47 89.4
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 2.1e-16 88.6 46 91.3
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 2.7e-16 88.2 56 76.8
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 2.7e-16 88.2 56 73.2
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 3.5e-16 87.8 56 75.0
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 3.5e-16 87.8 47 89.4
Ah.05g173340 Amaranthus hybridus HOM05D005130 ORTHO05D006185 4.6e-16 87.4 47 87.2
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 4.6e-16 87.4 47 87.2
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 4.6e-16 87.4 47 89.4
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 6.0e-16 87.0 56 76.8
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 6.0e-16 87.0 56 75.0
AUR62004123 Chenopodium quinoa HOM05D005130 ORTHO05D006185 6.0e-16 87.0 56 75.0
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 7.8e-16 86.7 56 71.4
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 7.8e-16 86.7 47 87.2
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 7.8e-16 86.7 56 75.0
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 7.8e-16 86.7 56 75.0
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 7.8e-16 86.7 47 89.4
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 1.3e-15 85.9 55 76.4
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 1.3e-15 85.9 47 87.2
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 1.7e-15 85.5 56 71.4
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 1.7e-15 85.5 56 71.4
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 1.7e-15 85.5 56 71.4
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 1.7e-15 85.5 47 85.1
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 1.7e-15 85.5 46 87.0
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 2.3e-15 85.1 48 85.4
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 2.3e-15 85.1 56 71.4
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 2.3e-15 85.1 56 71.4
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 2.3e-15 85.1 56 71.4
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 2.3e-15 85.1 56 71.4
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 2.3e-15 85.1 56 71.4
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 2.3e-15 85.1 56 73.2
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 2.3e-15 85.1 50 78.0
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 2.3e-15 85.1 47 87.2
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 2.3e-15 85.1 49 81.6
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 2.3e-15 85.1 47 87.2
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 3.0e-15 84.7 56 71.4
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 3.0e-15 84.7 56 71.4
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 3.0e-15 84.7 50 78.0
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 3.0e-15 84.7 56 71.4
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 3.0e-15 84.7 61 70.5
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 3.0e-15 84.7 56 71.4
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 3.0e-15 84.7 47 87.2
C03p90030 Brassica napus HOM05D005130 ORTHO05D006185 3.9e-15 84.3 56 69.6
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 3.9e-15 84.3 47 80.9
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 3.9e-15 84.3 47 83.0
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 5.1e-15 84.0 55 74.5
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 6.6e-15 83.6 56 71.4
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 6.6e-15 83.6 47 83.0
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 6.6e-15 83.6 47 85.1
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 8.7e-15 83.2 55 72.7
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 8.7e-15 83.2 47 83.0
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 8.7e-15 83.2 45 88.9
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 8.7e-15 83.2 47 83.0
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 1.1e-14 82.8 56 67.9
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 1.1e-14 82.8 56 67.9
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 1.1e-14 82.8 47 85.1
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 1.1e-14 82.8 47 80.9
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 1.5e-14 82.4 47 83.0
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.5e-14 82.4 47 85.1
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 1.9e-14 82.0 55 69.1
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 1.9e-14 82.0 46 82.6
Prupe.2G068700 Prunus persica HOM05D005130 ORTHO05D006185 1.9e-14 82.0 50 86.0
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 2.5e-14 81.6 49 73.5
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 3.3e-14 81.3 55 70.9
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 3.3e-14 81.3 47 80.9
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 4.3e-14 80.9 47 83.0
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 4.3e-14 80.9 47 80.9
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 4.3e-14 80.9 46 80.4
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 78.7
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.3e-13 79.3 66 65.2
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.3e-13 79.3 66 65.2
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 1.3e-13 79.3 47 80.9
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 2.4e-12 75.1 40 87.5
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 2.4e-12 75.1 50 70.0
Sabra17G0124900 Salix brachista HOM05D000100 ORTHO05D000052 2.4e-12 75.1 50 70.0
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 9.0e-12 73.2 46 76.1
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 2.9e-10 68.2 47 63.8
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 3.8e-10 67.8 33 93.9
Eucgr.H04599 Eucalyptus grandis HOM05D005130 ORTHO05D006185 3.8e-10 67.8 41 75.6
Ciclev10023954m.g Citrus clementina HOM05D005130 ORTHO05D006185 4.9e-10 67.4 61 60.7
SMO203G0049 Selaginella moellendorffii HOM05D005130 ORTHO05D006185 5.4e-09 63.9 47 68.1
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 5.4e-09 63.9 33 84.8
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 7.1e-09 63.5 47 66.0
SHI13750 Sapria himalayana HOM05D005130 ORTHO05D006185 2.1e-08 62.0 39 71.8


User provided reference genes

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