Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.0e-111 406.0 233 100.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.4e-79 298.9 214 73.4
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.9e-77 293.1 214 71.5
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.0e-75 287.3 215 71.6
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.7e-75 286.6 212 71.2
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 2.3e-75 286.2 211 68.2
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.3e-75 286.2 214 71.5
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 7.3e-74 281.2 212 70.3
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 7.3e-74 281.2 212 67.0
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.2e-73 280.4 216 69.0
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.6e-73 280.0 212 67.0
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.6e-73 280.0 211 68.7
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.8e-73 279.3 214 66.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 2.8e-73 279.3 214 66.8
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.8e-73 279.3 217 78.8
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.6e-73 278.9 211 67.8
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.7e-73 278.5 212 66.5
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.1e-73 277.7 214 67.3
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 1.8e-72 276.6 218 66.5
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.8e-72 276.6 216 73.1
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.4e-72 276.2 214 78.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 2.4e-72 276.2 214 65.4
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 2.4e-72 276.2 216 68.5
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.4e-72 276.2 214 66.8
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 4.0e-72 275.4 214 67.8
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.0e-72 275.4 214 66.8
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 4.0e-72 275.4 210 67.6
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.6e-71 272.7 247 59.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 3.4e-71 272.3 232 67.7
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 3.4e-71 272.3 232 67.7
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 5.8e-71 271.6 214 64.0
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.3e-70 270.4 215 65.1
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.7e-70 270.0 216 64.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 3.8e-70 268.9 216 67.1
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 3.8e-70 268.9 217 66.8
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-69 267.3 215 64.2
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-69 267.3 215 64.2
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.1e-69 267.3 211 66.4
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.4e-69 266.9 148 86.5
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.4e-69 266.9 211 63.0
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.9e-69 266.5 215 63.7
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 2.4e-69 266.2 216 66.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.2e-69 265.8 159 78.0
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 9.3e-69 264.2 214 65.9
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 9.3e-69 264.2 211 64.0
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.2e-68 263.8 214 66.4
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.2e-68 263.8 211 62.6
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-68 263.5 212 62.7
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.6e-68 263.5 216 63.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 2.1e-68 263.1 214 65.0
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.1e-68 263.1 216 67.1
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.7e-68 262.7 214 63.1
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.7e-68 262.7 212 64.6
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.7e-68 262.7 146 87.0
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 3.5e-68 262.3 214 62.1
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.5e-68 262.3 211 63.0
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 4.6e-68 261.9 216 63.4
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.0e-68 261.5 214 64.0
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.0e-67 260.8 215 63.3
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.3e-67 260.4 212 61.8
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.3e-67 260.4 231 60.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 5.1e-67 258.5 211 63.0
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.1e-67 258.5 211 63.0
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 5.1e-67 258.5 155 80.0
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 8.7e-67 257.7 211 63.0
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.1e-66 257.3 212 62.3
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.1e-66 257.3 154 79.2
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.5e-66 256.9 211 65.9
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.5e-66 256.9 213 60.1
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.9e-66 256.5 217 62.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.9e-66 256.5 145 82.1
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.3e-66 255.8 130 96.2
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.1e-65 253.1 213 60.1
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 2.8e-65 252.7 213 59.2
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.8e-65 252.7 213 62.4
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 3.6e-65 252.3 210 61.9
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.8e-65 251.9 216 59.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.8e-65 251.9 217 62.2
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 6.2e-65 251.5 210 61.9
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 6.2e-65 251.5 210 61.4
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 6.2e-65 251.5 210 61.9
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 6.2e-65 251.5 144 81.2
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 8.1e-65 251.1 211 60.2
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 6.9e-64 248.1 144 79.9
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 9.0e-64 247.7 212 62.3
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.2e-63 247.3 216 61.1
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.2e-63 247.3 215 60.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.2e-63 247.3 214 58.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.5e-63 246.9 214 68.7
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 2.0e-63 246.5 144 79.2
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 7.6e-63 244.6 213 59.2
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.7e-62 243.4 211 59.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.9e-61 240.0 228 58.3
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.9e-61 240.0 156 73.7
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 3.2e-61 239.2 211 57.8
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 9.3e-61 237.7 217 59.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.2e-60 237.3 212 59.9
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 6.7e-59 231.5 131 80.9
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 8.7e-59 231.1 188 66.0
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.4e-56 223.0 155 71.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 3.1e-56 222.6 216 54.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 9.0e-56 221.1 181 75.1
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 9.0e-56 221.1 143 74.8
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 9.0e-56 221.1 182 63.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.2e-55 220.7 298 47.0
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.2e-55 220.7 216 52.8
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 1.2e-55 220.7 216 54.2
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 4.5e-55 218.8 183 65.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.9e-54 216.1 143 73.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.6e-52 210.3 146 74.0
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.8e-51 206.8 141 68.1
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.3e-50 202.6 128 76.6
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 4.3e-50 202.2 141 65.2
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 6.9e-48 194.9 141 68.1
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 2.6e-47 193.0 140 66.4
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 3.4e-47 192.6 212 54.7
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.0e-46 191.0 216 56.9
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.9e-46 189.5 158 58.2
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 2.5e-45 186.4 105 80.0
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.3e-43 180.6 162 62.3
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.1e-42 177.6 131 64.9
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.7e-41 172.6 147 55.1
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.4e-40 170.6 188 54.3
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.1e-40 169.5 134 65.7
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 5.9e-39 165.2 181 55.8
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 3.8e-38 162.5 157 56.7
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.4e-37 160.6 155 57.4
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.4e-37 160.6 155 57.4
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 1.6e-36 157.1 155 47.7
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 2.5e-34 149.8 143 53.8
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.4e-32 144.1 157 51.6
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 3.9e-27 125.9 76 80.3
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.7e-25 120.6 157 44.6
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.3e-22 110.9 67 76.1
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-22 110.5 63 79.4
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.2e-22 110.2 60 85.0
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.6e-18 96.7 61 70.5
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 3.7e-17 92.8 90 54.4
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 4.8e-17 92.4 86 54.7
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 8.5e-14 81.6 78 55.1
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 8.5e-14 81.6 126 44.4
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.9e-13 80.5 78 53.8
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 2.5e-13 80.1 81 51.9
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 2.5e-13 80.1 81 51.9
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 4.7e-12 75.9 106 44.3
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-11 74.7 102 46.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.2e-10 71.2 102 44.1
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 5.3e-08 62.4 42 71.4
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 3.8e-06 56.2 34 76.5


User provided reference genes

Program Settings