Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.4e-47 192.6 96 100.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.1e-18 96.7 66 71.2
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 9.9e-17 90.1 66 66.7
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.3e-16 89.7 66 63.6
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.7e-16 88.2 66 63.6
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 8.3e-16 87.0 66 62.1
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 8.3e-16 87.0 66 62.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.1e-15 86.7 66 62.1
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.1e-15 86.7 66 59.1
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.1e-15 86.7 66 60.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.1e-15 86.7 66 60.6
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.1e-15 86.7 66 60.6
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.4e-15 86.3 66 60.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 7.1e-15 84.0 66 57.6
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 7.1e-15 84.0 66 60.6
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 7.1e-15 84.0 66 60.6
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.2e-14 83.2 66 62.1
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.6e-14 82.8 66 59.1
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.6e-14 82.8 66 57.6
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.1e-14 82.4 66 59.1
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.1e-14 82.4 66 59.1
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.1e-14 82.4 66 62.1
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.1e-14 82.4 66 59.1
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.1e-14 82.4 66 57.6
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.7e-14 82.0 66 59.1
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.5e-14 81.6 66 57.6
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 4.6e-14 81.3 66 59.1
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 4.6e-14 81.3 66 56.1
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 4.6e-14 81.3 66 59.1
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 6.0e-14 80.9 66 59.1
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 6.0e-14 80.9 66 59.1
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.8e-14 80.5 66 60.6
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 7.8e-14 80.5 66 56.1
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.0e-13 80.1 66 56.1
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.3e-13 79.7 57 64.9
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.7e-13 79.3 66 56.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.7e-13 79.3 66 59.1
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.3e-13 79.0 66 56.1
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 2.3e-13 79.0 66 56.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.3e-13 79.0 66 57.6
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 2.3e-13 79.0 66 54.5
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.0e-13 78.6 66 57.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.9e-13 78.2 66 57.6
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.1e-13 77.8 66 57.6
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 5.1e-13 77.8 61 59.0
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.1e-13 77.8 55 69.1
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 6.6e-13 77.4 66 57.6
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 6.6e-13 77.4 66 53.0
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 6.6e-13 77.4 57 63.2
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 8.6e-13 77.0 66 56.1
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 8.6e-13 77.0 66 57.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.5e-12 76.3 66 54.5
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.5e-12 76.3 66 54.5
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.5e-12 76.3 66 53.0
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 1.5e-12 76.3 57 59.6
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.5e-12 76.3 66 56.1
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.9e-12 75.9 66 53.0
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.9e-12 75.9 66 57.6
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.9e-12 75.9 66 53.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 2.5e-12 75.5 66 56.1
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.5e-12 75.5 66 54.5
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 2.5e-12 75.5 66 56.1
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.5e-12 75.5 66 56.1
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 2.5e-12 75.5 66 56.1
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 2.5e-12 75.5 66 56.1
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.3e-12 75.1 67 49.3
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-12 74.7 67 49.3
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.3e-12 74.7 66 54.5
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.6e-12 74.3 57 61.4
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 7.3e-12 73.9 57 61.4
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 7.3e-12 73.9 66 54.5
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 7.3e-12 73.9 66 53.0
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 7.3e-12 73.9 66 54.5
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 7.3e-12 73.9 66 56.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 9.6e-12 73.6 66 53.0
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.2e-11 73.2 57 61.4
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-11 73.2 66 51.5
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.6e-11 72.8 57 63.2
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.6e-11 72.8 66 54.5
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.6e-11 72.8 66 54.5
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.1e-11 72.4 66 54.5
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 2.8e-11 72.0 66 54.5
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.8e-11 72.0 66 53.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.8e-11 72.0 66 51.5
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.8e-11 72.0 66 50.0
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 3.6e-11 71.6 66 53.0
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.1e-10 70.1 66 51.5
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.4e-10 69.7 66 53.0
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.4e-10 69.7 66 51.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.8e-10 69.3 61 54.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.4e-10 68.9 66 53.0
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.1e-10 68.6 66 53.0
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.1e-10 68.6 66 53.0
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.1e-10 68.6 66 51.5
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 4.0e-10 68.2 66 53.0
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.0e-10 68.2 54 57.4
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 5.2e-10 67.8 66 50.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 5.2e-10 67.8 66 50.0
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 5.2e-10 67.8 66 50.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 5.2e-10 67.8 66 50.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 5.2e-10 67.8 66 50.0
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 5.2e-10 67.8 66 50.0
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 8.9e-10 67.0 66 43.9
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 8.9e-10 67.0 66 43.9
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 8.9e-10 67.0 57 56.1
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 8.9e-10 67.0 57 56.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-09 66.6 66 48.5
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-09 65.9 66 42.4
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-09 65.9 66 42.4
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-09 65.9 66 42.4
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-09 65.9 66 42.4
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.0e-09 65.9 66 50.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 2.6e-09 65.5 57 54.4
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-09 64.7 67 43.3
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-09 64.7 67 43.3
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.2e-08 62.4 66 43.9
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.9e-08 62.0 66 45.5
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 4.9e-08 61.2 66 42.4
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 6.4e-08 60.8 66 43.9
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 8.4e-08 60.5 56 50.0
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.1e-07 60.1 66 43.9
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 1.4e-07 59.7 66 43.9
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.4e-07 59.7 57 49.1
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.4e-07 59.7 57 49.1
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.4e-07 59.7 66 45.5
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.4e-07 59.7 55 50.9
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 2.4e-07 58.9 57 49.1
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.2e-07 58.5 66 40.9
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.4e-07 57.8 66 40.9
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 9.3e-07 57.0 66 37.9
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 9.3e-07 57.0 66 37.9
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 9.3e-07 57.0 55 56.4
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.2e-06 56.6 66 37.9
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-06 56.6 66 37.9
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.1e-06 55.8 55 43.6
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.7e-06 55.5 66 36.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 2.7e-06 55.5 51 56.9
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.5e-06 55.1 60 46.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.6e-06 54.7 66 37.9
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-06 54.7 59 49.2
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.0e-06 54.3 57 45.6
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 6.0e-06 54.3 43 58.1
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 6.0e-06 54.3 67 43.3


User provided reference genes

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