Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 5.7e-171 604.4 351 100.0
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.5e-155 553.1 350 91.4
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 2.0e-139 499.6 353 85.0
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 2.8e-138 495.7 351 84.3
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.4e-131 472.2 336 84.2
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.8e-131 471.5 336 84.2
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.7e-130 469.9 336 83.6
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.7e-130 468.8 336 83.9
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.7e-130 468.8 336 83.6
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.3e-122 443.7 367 65.4
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.3e-122 443.7 371 64.2
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.4e-121 440.3 367 64.0
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.9e-121 439.9 361 66.8
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.9e-121 439.9 367 65.1
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 2.4e-121 439.5 367 68.4
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 7.1e-121 438.0 368 64.4
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.2e-121 437.6 360 66.7
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.2e-120 437.2 361 66.5
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 3.5e-120 435.6 371 63.6
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 4.6e-120 435.3 368 63.9
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 6.0e-120 434.9 360 64.7
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.0e-119 434.1 379 69.1
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.7e-119 433.3 364 64.6
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 5.1e-119 431.8 349 65.3
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.1e-118 430.6 371 62.8
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 5.6e-118 428.3 368 63.3
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 1.2e-117 427.2 409 58.9
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 8.1e-117 424.5 368 62.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.4e-116 423.7 368 62.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.8e-116 423.3 368 63.0
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.3e-116 422.9 368 62.5
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 4.0e-116 422.2 367 62.4
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 5.2e-116 421.8 335 66.9
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.5e-115 420.2 358 63.1
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.6e-115 419.5 361 61.8
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 3.4e-115 419.1 389 59.6
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 5.8e-115 418.3 421 58.0
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 6.4e-114 414.8 327 66.7
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.1e-113 414.1 367 61.6
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 9.2e-113 411.0 379 60.4
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 3.5e-112 409.1 403 58.8
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 6.6e-111 404.8 366 62.8
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.1e-110 404.1 404 56.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 1.5e-110 403.7 366 59.6
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 2.5e-110 402.9 368 59.8
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 7.3e-110 401.4 359 60.2
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.2e-109 400.6 367 58.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 8.1e-109 397.9 367 59.7
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 1.1e-108 397.5 379 58.0
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.4e-108 397.1 368 59.2
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.4e-108 397.1 365 60.8
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 3.1e-108 396.0 330 63.3
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.1e-108 396.0 362 59.4
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.5e-107 393.7 464 50.4
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 5.8e-107 391.7 354 59.3
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 9.9e-107 391.0 358 67.9
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 2.9e-106 389.4 328 62.5
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 6.4e-106 388.3 330 62.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 6.4e-106 388.3 362 57.5
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 8.4e-106 387.9 361 57.9
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.4e-105 387.1 330 62.1
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 1.4e-105 387.1 429 52.0
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 3.2e-105 386.0 415 52.5
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 4.2e-105 385.6 379 56.2
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 4.2e-105 385.6 330 61.8
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 5.4e-105 385.2 330 61.8
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 5.4e-105 385.2 415 52.5
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 5.4e-105 385.2 414 52.7
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 9.3e-105 384.4 327 62.4
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-104 384.0 332 62.0
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.2e-104 384.0 332 62.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.2e-104 384.0 323 63.2
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 1.6e-104 383.6 329 62.3
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 3.5e-104 382.5 362 66.0
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 6.0e-104 381.7 336 59.8
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.0e-103 380.9 332 61.1
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 1.3e-103 380.6 332 61.4
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.7e-103 380.2 406 53.2
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 2.3e-103 379.8 338 60.4
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.0e-103 379.4 337 60.5
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 6.6e-103 378.3 330 61.2
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 8.7e-103 377.9 413 54.2
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.1e-102 377.5 406 53.0
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.1e-102 377.5 390 55.1
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.5e-102 376.3 379 55.1
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 4.3e-102 375.6 354 55.6
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 5.6e-102 375.2 387 54.3
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 9.6e-102 374.4 333 59.8
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 2.1e-101 373.2 367 56.9
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 6.2e-101 371.7 457 48.6
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.5e-99 367.1 383 54.8
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.0e-99 366.7 372 56.5
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 4.4e-99 365.5 354 56.2
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 9.3e-97 357.8 360 56.4
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 9.3e-97 357.8 358 55.6
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.7e-96 356.3 329 67.5
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 7.8e-96 354.8 318 61.3
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.3e-95 354.0 351 55.6
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.3e-95 353.2 330 56.7
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.2e-93 345.1 351 54.4
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.8e-92 343.6 345 56.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.5e-91 340.5 371 51.8
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.9e-90 336.3 365 53.2
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.4e-89 332.0 351 54.1
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.0e-87 327.8 330 56.7
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 5.1e-87 325.5 298 60.1
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 5.1e-87 325.5 298 60.1
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 5.7e-78 295.4 222 70.3
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 8.2e-77 291.6 367 47.4
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 3.4e-75 286.2 328 48.5
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.9e-71 272.7 354 48.9
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 4.8e-69 265.8 352 43.5
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 8.2e-69 265.0 276 54.7
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 6.9e-68 261.9 243 59.3
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.5e-65 253.4 210 62.9
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 9.4e-65 251.5 320 45.0
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.5e-62 243.4 222 59.9
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.3e-53 214.5 264 48.1
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.3e-52 209.1 156 70.5
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 6.8e-39 165.6 382 32.2
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 5.7e-38 162.5 153 58.8
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.7e-37 161.0 139 58.3
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.4e-36 156.0 129 66.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 5.2e-31 139.4 144 54.2
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 7.2e-25 119.0 124 52.4
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 6.8e-23 112.5 88 65.9
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.6e-18 95.9 115 46.1
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 8.0e-16 89.0 144 38.9
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.4e-12 78.2 66 60.6
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 3.9e-10 70.1 53 67.9
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 3.9e-10 70.1 52 69.2
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 4.3e-09 66.6 49 71.4
FAN06G2188 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.8e-07 59.3 34 85.3
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 9.8e-06 55.5 286 21.7


User provided reference genes

Program Settings