Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 5.7e-161 570.9 288 100.0
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.8e-80 302.4 168 86.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.5e-79 299.7 167 87.4
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.1e-78 296.6 169 83.4
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 4.6e-78 295.4 169 82.8
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 6.1e-78 295.0 169 84.6
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 3.0e-77 292.7 168 83.3
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.1e-77 292.0 168 84.5
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 6.7e-77 291.6 167 85.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.9e-76 290.0 168 83.3
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.9e-76 290.0 168 83.3
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.5e-76 289.7 169 83.4
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.7e-76 288.5 168 82.7
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.2e-75 286.6 168 80.4
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.2e-75 286.6 168 80.4
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.8e-75 286.2 206 69.4
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 2.8e-75 286.2 167 77.8
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 3.7e-75 285.8 169 82.2
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 4.8e-75 285.4 170 82.9
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.8e-75 285.4 170 82.9
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 4.8e-75 285.4 164 82.3
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.2e-75 284.6 164 81.1
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 8.2e-75 284.6 164 81.1
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-74 284.3 168 79.8
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.8e-74 283.5 164 81.7
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.8e-74 283.5 169 81.1
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 2.4e-74 283.1 202 71.8
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 3.1e-74 282.7 165 81.2
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.1e-74 282.7 168 79.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 3.1e-74 282.7 168 81.0
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 3.1e-74 282.7 170 81.2
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 5.3e-74 282.0 167 79.0
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 6.9e-74 281.6 168 78.6
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 9.0e-74 281.2 169 81.7
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.2e-73 280.8 168 79.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.6e-73 279.6 168 80.4
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 3.4e-73 279.3 167 77.2
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.4e-73 279.3 165 79.4
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.4e-73 279.3 165 80.0
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.7e-72 276.9 167 77.8
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-72 276.6 167 76.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.2e-72 276.6 166 81.3
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.9e-72 276.2 167 78.4
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.9e-72 276.2 167 77.8
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 3.8e-72 275.8 167 76.6
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.8e-72 275.8 167 77.2
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.8e-72 275.8 167 77.8
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 5.0e-72 275.4 167 77.2
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 6.5e-72 275.0 167 77.8
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 6.5e-72 275.0 168 75.6
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 8.5e-72 274.6 167 77.2
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.5e-72 274.6 167 76.6
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.1e-71 274.2 209 68.4
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.1e-71 274.2 167 76.6
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.4e-71 273.9 165 78.8
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.9e-71 273.5 167 76.6
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.9e-71 273.5 168 78.0
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.9e-71 273.5 167 76.6
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.5e-71 273.1 167 76.6
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 2.5e-71 273.1 169 77.5
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 3.2e-71 272.7 167 76.6
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 5.5e-71 271.9 167 76.6
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 5.5e-71 271.9 167 76.0
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 5.5e-71 271.9 169 79.9
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 5.5e-71 271.9 168 77.4
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 9.4e-71 271.2 168 77.4
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 9.4e-71 271.2 167 74.3
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 9.4e-71 271.2 167 77.2
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 9.4e-71 271.2 164 77.4
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.2e-70 270.8 167 76.6
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.2e-70 270.8 167 76.6
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-70 270.8 168 76.2
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.6e-70 270.4 167 75.4
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.6e-70 270.4 165 78.2
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.6e-70 270.4 199 69.3
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 2.7e-70 269.6 167 74.3
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 3.6e-70 269.2 165 75.8
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 4.6e-70 268.9 166 74.1
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 4.6e-70 268.9 168 78.6
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 6.1e-70 268.5 165 77.0
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 7.9e-70 268.1 184 71.7
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.0e-69 267.7 167 76.0
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.4e-69 267.3 169 79.3
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.8e-69 266.9 169 75.7
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.8e-69 266.9 186 71.0
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.9e-69 265.8 167 76.0
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.7e-69 265.0 167 75.4
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.4e-68 262.3 165 74.5
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 4.4e-68 262.3 180 70.6
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.7e-67 260.4 164 73.2
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.4e-66 257.3 167 71.3
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 4.1e-66 255.8 165 73.3
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 4.1e-66 255.8 130 96.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 4.5e-65 252.3 192 66.1
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 2.2e-64 250.0 164 73.2
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 2.9e-64 249.6 163 73.6
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 2.5e-63 246.5 163 74.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.5e-63 246.5 185 67.0
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-60 236.9 142 77.5
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 5.7e-60 235.3 167 66.5
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 7.4e-60 235.0 167 66.5
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.2e-59 233.4 165 64.8
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-57 227.3 168 67.9
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 5.9e-57 225.3 168 67.3
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.9e-56 223.0 167 67.1
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.0e-56 222.2 169 62.1
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.7e-54 215.7 161 65.2
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.7e-54 215.7 161 65.2
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 6.1e-54 215.3 168 60.1
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 3.0e-53 213.0 132 78.8
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 6.7e-53 211.8 143 68.5
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 6.7e-53 211.8 186 57.5
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.3e-51 207.6 168 63.1
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.2e-51 206.8 185 60.5
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.3e-51 205.3 168 66.1
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.5e-47 193.4 166 56.0
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 5.2e-45 185.7 171 52.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 5.4e-42 175.6 100 84.0
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.0e-41 173.7 101 84.2
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.7e-41 173.3 100 82.0
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.5e-41 172.6 112 74.1
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.3e-40 171.0 100 82.0
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 5.0e-40 169.1 100 80.0
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 6.8e-37 158.7 164 45.7
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.8e-37 158.7 97 79.4
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 2.4e-34 150.2 169 46.7
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 7.8e-33 145.2 95 72.6
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.9e-32 143.3 123 58.5
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 7.3e-31 138.7 77 85.7
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 6.1e-30 135.6 115 60.9
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.0e-29 134.8 124 55.6
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 3.0e-29 133.3 115 59.1
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 4.4e-28 129.4 72 83.3
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 2.4e-26 123.6 112 57.1
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 2.4e-26 123.6 71 78.9
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 7.0e-26 122.1 131 55.0
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 7.0e-26 122.1 131 55.0
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 7.0e-26 122.1 80 71.2
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.3e-24 117.9 167 42.5
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.3e-24 117.1 99 63.6
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 5.0e-24 115.9 79 72.2
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.5e-23 114.4 72 69.4
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.4e-18 97.8 65 67.7
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 3.5e-17 93.2 62 71.0
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.7e-16 90.9 66 63.6
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 3.0e-16 90.1 167 34.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 4.3e-15 86.3 53 73.6
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 1.2e-12 78.2 52 71.2
MD11G1206200 Malus domestica HOM05D004024 ORTHO05D004639 1.2e-06 58.2 44 70.5
Prupe.4G231300 Prunus persica HOM05D004024 ORTHO05D004639 8.1e-06 55.5 33 78.8


User provided reference genes

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