Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 0.0e+00 1879.8 926 100.0
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 0.0e+00 1418.3 925 76.2
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 0.0e+00 1320.1 924 72.3
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 0.0e+00 1317.0 924 72.1
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 0.0e+00 1315.8 924 72.6
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 0.0e+00 1311.2 924 72.3
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 0.0e+00 1112.4 947 61.5
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1097.0 924 62.1
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 0.0e+00 1088.6 926 61.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 0.0e+00 1085.5 926 62.1
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 9.5e-311 1070.1 924 58.9
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 4.2e-306 1054.7 925 58.8
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-297 1025.4 926 57.7
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 4.7e-297 1024.6 922 57.4
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 7.4e-295 1017.3 925 60.0
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.0e-288 996.9 924 58.8
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-287 993.4 899 57.8
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.3e-285 984.6 914 56.0
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 3.2e-282 975.3 926 55.8
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.6e-281 971.8 914 55.6
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 6.1e-273 944.5 923 53.1
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 4.4e-271 938.3 922 53.7
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 5.7e-271 937.9 924 53.0
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 1.4e-269 933.3 923 52.9
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.6e-265 919.8 922 52.9
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 4.9e-262 908.3 913 53.7
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.1e-261 905.2 922 53.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 7.0e-261 904.4 932 54.1
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 9.2e-261 904.0 927 54.6
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 3.3e-258 895.6 928 53.0
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 5.6e-258 894.8 923 53.5
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 4.9e-254 881.7 913 52.2
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.7e-252 875.9 912 52.4
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 3.5e-252 875.5 909 52.3
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 1.2e-249 867.1 930 51.0
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 6.2e-249 864.8 923 52.2
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 1.7e-246 856.7 922 51.4
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.4e-246 854.7 723 59.2
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.9e-238 828.6 934 50.1
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 9.2e-237 824.3 925 50.9
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 7.8e-236 821.2 910 50.3
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.0e-235 820.8 827 52.4
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.9e-235 818.9 945 48.8
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 4.3e-234 815.5 939 49.6
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 9.2e-229 797.7 920 50.8
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.7e-227 793.5 919 48.7
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 3.1e-224 782.7 831 49.7
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.8e-222 775.8 782 51.8
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.1e-220 770.0 919 47.2
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.5e-220 769.2 745 56.6
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 8.7e-219 764.6 787 52.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 2.4e-213 746.5 898 47.7
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 7.9e-212 741.5 890 46.7
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.9e-206 722.2 927 43.9
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 6.7e-203 711.8 940 43.6
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 5.3e-200 702.2 926 43.5
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 8.4e-198 694.9 880 45.6
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 1.5e-194 684.1 918 44.3
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 9.7e-194 681.4 892 43.3
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.8e-192 677.2 912 43.5
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.0e-190 669.1 933 42.8
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 7.2e-189 665.2 947 43.1
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 7.9e-188 661.8 920 42.0
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 6.7e-187 658.7 956 40.4
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 6.5e-182 642.1 922 40.5
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.9e-181 640.6 929 42.2
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.6e-180 637.5 936 42.1
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.7e-180 636.7 929 40.7
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 6.7e-179 632.1 926 41.3
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 8.8e-179 631.7 930 40.4
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 7.0e-176 622.1 941 40.7
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.6e-175 620.2 893 41.3
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.9e-175 619.0 936 42.0
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 6.5e-174 615.5 930 40.3
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 1.1e-173 614.8 934 41.2
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 3.6e-172 609.8 892 41.7
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 2.3e-171 607.1 897 41.1
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 3.0e-171 606.7 934 40.7
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.0e-170 604.0 926 39.1
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 9.7e-170 601.7 947 40.5
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.6e-167 594.3 803 44.2
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.0e-163 581.6 921 40.4
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 6.8e-163 578.9 929 39.3
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.0e-162 577.4 943 40.0
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 1.7e-161 574.3 894 40.0
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.7e-161 574.3 971 40.2
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.4e-160 571.2 887 39.9
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 1.8e-160 570.9 887 39.9
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 5.9e-159 565.8 889 39.8
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.7e-158 564.3 880 41.1
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.2e-148 531.6 772 40.3
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.5e-146 524.6 920 37.3
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.2e-143 515.0 828 39.7
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 1.5e-141 508.1 670 44.6
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 3.1e-139 500.4 935 36.1
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.4e-138 496.5 575 46.3
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 4.6e-127 459.9 417 56.8
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.5e-125 454.9 923 33.8
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.6e-119 434.9 399 55.1
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 2.3e-118 431.0 970 34.4
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.4e-112 411.8 535 43.4
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.1e-110 403.3 958 33.7
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 2.7e-103 380.9 945 31.7
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.5e-101 375.2 947 31.2
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 5.6e-101 373.2 548 40.1
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 9.9e-98 362.5 484 42.4
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.9e-97 360.9 662 35.0
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.3e-89 335.5 953 30.5
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 5.3e-83 313.5 519 38.7
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.8e-81 307.4 206 72.8
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.3e-80 302.8 778 33.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-79 302.4 524 36.5
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.3e-77 294.3 646 31.6
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 7.4e-69 266.5 453 38.6
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 1.1e-67 262.7 353 41.4
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.2e-63 249.2 454 38.3
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 6.3e-60 236.9 183 61.2
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.1e-59 234.6 430 36.5
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.0e-54 219.5 294 43.5
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 4.0e-54 217.6 288 43.1
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.5e-50 204.1 442 33.9
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.0e-49 203.0 761 26.7
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.3e-49 202.6 404 33.4
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 8.5e-49 199.9 404 32.9
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.6e-47 194.5 533 30.8
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.0e-47 193.4 548 31.4
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 5.4e-43 180.6 335 34.6
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.6e-42 179.1 249 41.4
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 1.3e-36 159.5 139 59.0
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 4.1e-35 154.5 686 24.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 7.0e-35 153.7 616 25.5
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.2e-34 152.9 215 38.6
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 5.0e-33 147.5 316 30.4
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 5.0e-33 147.5 316 30.4
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.8e-30 139.0 114 57.0
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-29 136.3 393 30.8
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.7e-28 131.3 382 29.6
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.6e-24 117.5 211 37.4
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 6.2e-23 114.0 530 25.7
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 3.7e-20 104.8 425 26.1
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 6.0e-18 97.4 190 37.9
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 4.3e-16 91.3 617 22.5
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.6e-16 90.9 407 24.3
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 4.7e-15 87.8 148 39.2
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 6.2e-15 87.4 148 39.9
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 1.1e-14 86.7 123 45.5
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-13 83.2 304 27.0
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.8e-13 80.1 185 33.0
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 4.1e-11 74.7 124 37.9
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 7.1e-11 73.9 240 31.7
Medtr1g071240 Medicago truncatula HOM05D000001 ORTHO05D000003 7.1e-11 73.9 196 33.2
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 4.7e-07 61.2 138 34.8
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-06 60.1 223 29.1
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.8e-06 57.4 131 29.0


User provided reference genes

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