Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 7.7e-157 557.0 258 100.0
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 5.3e-134 481.1 258 84.9
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 5.5e-131 471.1 258 84.1
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.4e-129 466.5 258 81.8
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 4.0e-129 464.9 258 82.6
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.2e-128 463.4 253 83.0
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.0e-128 462.6 258 81.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.6e-128 462.2 252 81.7
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.4e-128 461.8 252 82.9
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.4e-128 461.8 248 83.9
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 3.4e-128 461.8 252 83.7
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 7.5e-128 460.7 257 81.7
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 9.8e-128 460.3 248 83.5
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.7e-127 459.5 248 83.5
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.2e-127 459.1 255 82.0
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.8e-127 458.8 259 79.9
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 8.3e-127 457.2 255 82.0
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.1e-126 456.8 258 80.2
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.1e-126 456.8 253 81.8
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.8e-126 456.1 255 80.4
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.4e-126 455.7 238 85.3
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 5.4e-126 454.5 259 80.7
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.2e-125 453.4 244 81.6
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 3.5e-125 451.8 254 81.1
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 4.5e-125 451.4 243 81.9
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 7.7e-125 450.7 255 80.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 7.7e-125 450.7 253 80.6
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.0e-124 450.3 241 83.4
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-124 450.3 245 82.0
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.0e-124 450.3 243 82.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.7e-124 449.5 233 85.4
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.7e-124 449.5 241 83.8
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 2.2e-124 449.1 244 81.1
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 5.0e-124 448.0 243 84.0
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 8.5e-124 447.2 241 82.2
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.1e-123 446.8 242 82.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.1e-123 446.8 247 80.6
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.5e-123 446.4 236 83.5
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.9e-123 446.0 234 83.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.9e-123 446.0 256 78.5
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 2.5e-123 445.7 252 79.0
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.2e-123 445.3 239 84.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.2e-123 445.3 252 78.6
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 4.2e-123 444.9 241 82.2
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 4.2e-123 444.9 251 78.9
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 7.2e-123 444.1 252 78.6
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 7.2e-123 444.1 238 82.4
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.6e-122 443.0 241 82.6
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.7e-122 442.2 250 78.8
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.7e-122 442.2 241 81.7
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.4e-121 439.9 252 77.8
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.8e-121 439.5 252 79.0
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-121 439.5 252 77.4
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 2.3e-121 439.1 252 77.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.3e-121 439.1 241 80.9
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.0e-121 438.3 239 81.6
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 4.0e-121 438.3 236 82.6
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 5.2e-121 438.0 241 80.5
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.2e-120 436.8 244 78.7
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.5e-120 436.4 256 76.2
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.6e-120 435.6 241 79.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 5.7e-120 434.5 258 76.0
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.7e-120 434.5 234 79.9
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 5.7e-120 434.5 252 78.2
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 7.5e-120 434.1 241 80.1
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 7.5e-120 434.1 241 79.7
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 7.5e-120 434.1 241 80.1
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 7.5e-120 434.1 248 75.8
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.8e-120 433.7 250 77.2
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.3e-119 433.3 248 76.6
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.3e-119 433.3 237 80.6
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-119 433.3 234 79.9
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-119 433.0 241 79.7
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.7e-119 433.0 236 79.7
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.7e-119 433.0 243 79.4
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.7e-119 433.0 253 78.3
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.7e-119 433.0 232 83.2
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 4.9e-119 431.4 242 78.1
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.3e-119 431.0 254 76.0
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 6.3e-119 431.0 235 79.6
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 8.3e-119 430.6 229 82.5
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.1e-118 430.3 239 77.4
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.4e-118 429.9 242 78.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.4e-118 429.9 240 78.3
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.8e-118 429.5 236 80.9
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 2.4e-118 429.1 240 77.9
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.4e-118 429.1 248 77.0
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.1e-118 428.7 237 79.7
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 3.1e-118 428.7 236 80.5
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 5.4e-118 427.9 231 81.0
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 5.4e-118 427.9 236 79.2
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 7.0e-118 427.6 244 76.6
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 7.0e-118 427.6 232 80.6
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 9.1e-118 427.2 244 77.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.1e-118 427.2 239 77.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-117 426.8 233 79.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 2.7e-117 425.6 231 80.5
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 2.7e-117 425.6 231 80.5
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.9e-117 424.5 230 80.9
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 5.9e-117 424.5 233 79.8
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 5.9e-117 424.5 243 76.1
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.7e-116 422.9 252 75.4
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.7e-116 422.9 246 76.0
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.3e-116 422.5 236 79.7
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.3e-116 422.5 230 80.4
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.9e-116 422.2 230 80.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.8e-116 421.8 235 79.6
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 3.8e-116 421.8 238 77.3
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 6.6e-116 421.0 243 74.5
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.1e-115 420.2 247 75.3
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.9e-115 419.5 236 77.1
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.5e-115 419.1 246 75.6
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.3e-115 418.7 234 78.6
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 4.2e-115 418.3 259 72.2
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.5e-115 417.9 237 78.5
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.5e-115 417.9 241 74.7
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.8e-114 415.6 250 74.0
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 3.6e-114 415.2 232 78.4
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.6e-114 415.2 232 77.6
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 3.6e-114 415.2 236 77.1
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.7e-114 414.8 240 75.8
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-113 412.5 236 75.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 5.2e-113 411.4 234 77.4
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-112 409.8 234 76.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.5e-112 409.8 241 74.7
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.5e-112 409.8 233 76.0
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.4e-112 408.3 240 75.8
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.7e-112 407.9 248 74.2
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.7e-112 407.9 245 74.7
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 7.5e-112 407.5 245 73.5
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 7.5e-112 407.5 236 75.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.2e-111 406.0 235 74.5
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 6.3e-111 404.4 240 73.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 6.3e-111 404.4 238 76.9
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-110 403.7 233 75.1
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.8e-110 402.9 212 84.4
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 5.4e-110 401.4 235 74.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.9e-107 392.9 243 72.0
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.3e-107 391.7 239 72.4
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.2e-106 390.2 224 75.4
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.0e-104 382.9 236 72.0
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 7.0e-102 374.4 197 84.3
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.3e-100 370.2 257 67.7
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 8.6e-100 367.5 243 67.1
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.4e-97 360.1 246 64.2
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 5.8e-96 354.8 227 68.7
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.2e-95 352.8 222 69.4
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.7e-95 352.1 241 65.1
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 4.1e-94 348.6 241 65.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 5.4e-94 348.2 241 65.1
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.1e-91 340.5 243 63.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 8.6e-84 314.3 176 83.0
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.8e-81 306.6 243 60.9
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 2.4e-78 296.2 161 79.5
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 7.8e-77 291.2 159 81.1
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 9.0e-65 251.1 159 69.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.2e-54 216.1 218 48.2
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.6e-53 213.8 234 47.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.0e-47 194.5 214 49.1
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.0e-40 170.2 96 81.2
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 2.0e-32 143.7 107 63.6
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 7.2e-30 135.2 116 55.2
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.3e-23 114.4 135 45.9
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 4.0e-12 76.3 65 56.9
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 6.8e-12 75.5 51 56.9


User provided reference genes

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