Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 0.0e+00 2288.5 1148 100.0
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 0.0e+00 1502.3 1080 72.1
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 0.0e+00 1252.3 1076 63.9
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 0.0e+00 1099.3 1105 56.9
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 0.0e+00 1097.4 1078 58.1
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 2.5e-300 1035.8 1103 55.2
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 6.7e-261 904.8 1069 52.4
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 4.2e-255 885.6 1093 49.8
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 4.6e-246 855.5 1085 49.4
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 8.2e-219 765.0 1117 44.2
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 3.7e-211 739.6 1090 44.4
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 2.9e-208 729.9 1075 43.7
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 4.1e-202 709.5 1096 43.0
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 7.2e-199 698.7 1073 43.2
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 8.9e-197 691.8 1096 42.3
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 8.9e-189 665.2 1120 41.2
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 3.5e-185 653.3 1089 40.1
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 1.8e-181 641.0 1020 42.9
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 3.4e-180 636.7 1114 41.4
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 1.5e-175 621.3 1087 38.8
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 1.6e-174 617.8 1096 38.9
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 4.0e-173 613.2 1123 38.6
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 6.8e-173 612.5 1092 38.6
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 2.0e-172 610.9 1087 38.7
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 5.8e-172 609.4 1096 38.7
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 3.7e-171 606.7 1060 39.6
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 4.6e-169 599.7 1165 39.4
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 6.6e-168 595.9 1106 38.3
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 3.3e-167 593.6 1027 40.5
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 1.9e-162 577.8 1203 37.3
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 1.7e-160 571.2 1085 37.5
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 1.5e-159 568.2 1129 37.0
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 2.4e-157 560.8 1263 34.1
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 1.7e-155 554.7 1085 37.1
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 1.7e-155 554.7 1192 36.8
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 4.6e-153 546.6 1119 36.3
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 4.0e-149 533.5 888 43.6
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 9.9e-148 528.9 1090 37.5
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 4.2e-146 523.5 884 41.2
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 5.1e-144 516.5 1134 35.7
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 5.6e-143 513.1 884 39.9
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 2.3e-136 491.1 1131 35.4
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 2.8e-134 484.2 1127 35.1
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 1.6e-129 468.4 1088 33.7
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 1.3e-128 465.3 1118 34.1
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 2.3e-128 464.5 1093 34.7
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.8e-125 454.9 1072 35.8
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 9.4e-122 442.6 1014 35.9
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 1.8e-120 438.3 1085 33.9
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 1.3e-118 432.2 1065 34.7
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 3.1e-117 427.6 1038 35.1
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 2.0e-116 424.9 1127 33.4
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 1.1e-114 419.1 999 34.3
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 1.4e-114 418.7 1034 34.5
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 6.1e-113 413.3 1101 32.2
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 8.8e-112 409.5 969 34.1
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 9.7e-111 406.0 1118 32.4
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 9.4e-106 389.4 1088 31.2
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 6.7e-104 383.3 591 40.6
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 1.7e-102 378.6 960 34.0
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 1.4e-101 375.6 1185 31.9
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 1.8e-96 358.6 1082 32.0
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 2.6e-95 354.8 1002 31.7
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 3.4e-95 354.4 913 33.7
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 1.8e-88 332.0 1082 30.4
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 3.4e-87 327.8 863 33.1
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 1.7e-86 325.5 358 50.0
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 2.8e-86 324.7 978 30.2
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 2.0e-84 318.5 877 33.6
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 4.5e-84 317.4 990 30.3
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 8.6e-83 313.2 575 37.9
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 9.8e-79 299.7 373 47.2
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 1.4e-77 295.8 875 32.9
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 1.9e-69 268.9 850 30.6
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 1.2e-63 249.6 1085 27.4
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 3.7e-62 244.6 275 46.2
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 2.7e-60 238.4 750 31.7
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 4.1e-53 214.5 776 28.4
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 1.4e-48 199.5 877 27.5
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 9.9e-47 193.4 159 59.7
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 1.7e-46 192.6 381 34.9
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 4.6e-44 184.5 459 34.4
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 6.0e-36 157.5 137 54.0
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 3.6e-33 148.3 120 60.8
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 1.4e-21 109.8 81 64.2
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 3.2e-21 108.6 91 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 9.0e-16 90.5 153 34.6
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 2.5e-13 82.4 67 58.2
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 9.3e-13 80.5 60 60.0
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 6.1e-12 77.8 58 58.6
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 1.3e-11 76.6 70 47.1
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 2.3e-11 75.9 97 49.5
vmacro13770 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 5.1e-11 74.7 54 63.0
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-10 70.5 109 34.9
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 1.8e-08 66.2 406 25.1


User provided reference genes

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