Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.1e-65 252.3 132 100.0
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 4.3e-39 164.9 124 72.6
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 8.5e-35 150.6 137 64.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.5e-35 150.6 137 64.2
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.7e-33 145.6 138 62.3
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.7e-33 145.6 137 62.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.0e-32 143.7 138 62.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 2.0e-20 102.8 125 51.2
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 2.0e-20 102.8 125 51.2
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 1.8e-16 89.7 118 47.5
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.0e-15 86.3 139 45.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.4e-15 85.1 145 42.8
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 7.4e-15 84.3 116 50.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 7.4e-15 84.3 65 72.3
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 1.3e-14 83.6 124 46.0
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.2e-14 80.9 141 44.7
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 7.0e-13 77.8 67 62.7
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 9.1e-13 77.4 65 67.7
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.6e-12 76.6 128 40.6
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.0e-12 76.3 136 41.9
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 2.6e-12 75.9 61 68.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.9e-12 74.7 121 43.0
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 5.9e-12 74.7 56 67.9
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 7.7e-12 74.3 137 40.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 7.7e-12 74.3 118 45.8
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.0e-11 73.9 121 43.0
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.3e-11 73.6 52 75.0
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.2e-11 72.8 68 60.3
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 2.2e-11 72.8 67 58.2
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 2.9e-11 72.4 53 73.6
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.5e-11 71.2 52 73.1
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.5e-11 70.9 63 69.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 8.5e-11 70.9 67 56.7
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.1e-10 70.5 72 59.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 1.1e-10 70.5 63 68.3
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.5e-10 70.1 63 66.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.5e-10 70.1 63 66.7
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 1.9e-10 69.7 93 52.7
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.9e-10 69.7 123 42.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.9e-10 69.7 66 60.6
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.5e-10 69.3 51 76.5
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.2e-10 68.9 54 64.8
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 4.2e-10 68.6 52 69.2
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.2e-10 68.6 67 59.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 4.2e-10 68.6 107 44.9
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.2e-10 68.6 97 46.4
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.2e-10 68.6 130 39.2
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.5e-10 68.2 54 64.8
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.5e-10 68.2 54 64.8
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 5.5e-10 68.2 110 45.5
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 7.2e-10 67.8 61 63.9
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 9.4e-10 67.4 55 61.8
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 1.2e-09 67.0 49 69.4
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.6e-09 66.6 148 42.6
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.1e-09 66.2 127 40.2
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.1e-09 66.2 77 58.4
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.1e-09 66.2 63 63.5
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 2.1e-09 66.2 122 40.2
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.7e-09 65.9 55 60.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.7e-09 65.9 55 60.0
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 2.7e-09 65.9 131 38.9
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.7e-09 65.9 124 41.9
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 3.6e-09 65.5 50 68.0
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 4.7e-09 65.1 65 60.0
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 4.7e-09 65.1 59 52.5
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.7e-09 65.1 58 60.3
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 6.1e-09 64.7 71 50.7
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.1e-09 64.7 53 64.2
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 6.1e-09 64.7 58 62.1
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 1.0e-08 63.9 48 66.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.0e-08 63.9 55 65.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.4e-08 63.5 54 63.0
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.4e-08 63.5 70 51.4
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 1.4e-08 63.5 59 59.3
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.4e-08 63.5 59 59.3
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.4e-08 63.5 59 59.3
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.4e-08 63.5 54 61.1
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 1.8e-08 63.2 58 67.2
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.3e-08 62.8 46 78.3
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 2.3e-08 62.8 120 40.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.0e-08 62.4 56 64.3
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.0e-08 62.4 56 64.3
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 4.0e-08 62.0 51 62.7
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.0e-08 62.0 56 64.3
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 4.0e-08 62.0 48 64.6
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.0e-08 62.0 120 36.7
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.2e-08 61.6 59 61.0
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 5.2e-08 61.6 50 64.0
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 5.2e-08 61.6 64 56.2
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 6.7e-08 61.2 107 40.2
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 6.7e-08 61.2 48 70.8
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 8.8e-08 60.8 56 58.9
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.8e-08 60.8 136 38.2
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 8.8e-08 60.8 67 59.7
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.2e-07 60.5 47 70.2
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.2e-07 60.5 68 51.5
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.5e-07 60.1 48 60.4
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.5e-07 60.1 56 57.1
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 1.5e-07 60.1 125 36.0
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 2.0e-07 59.7 48 62.5
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 2.6e-07 59.3 124 37.9
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 2.6e-07 59.3 65 55.4
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 2.6e-07 59.3 81 45.7
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 3.3e-07 58.9 47 72.3
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 3.3e-07 58.9 52 61.5
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 3.3e-07 58.9 56 60.7
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 3.3e-07 58.9 38 78.9
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.4e-07 58.5 55 54.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 4.4e-07 58.5 82 47.6
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.4e-07 58.5 41 78.0
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 5.7e-07 58.2 36 77.8
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 5.7e-07 58.2 56 57.1
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 5.7e-07 58.2 54 59.3
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 7.5e-07 57.8 55 56.4
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.5e-07 57.8 44 70.5
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 7.5e-07 57.8 49 61.2
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 7.5e-07 57.8 54 61.1
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 7.5e-07 57.8 43 62.8
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 9.7e-07 57.4 55 50.9
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 9.7e-07 57.4 119 39.5
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.7e-07 57.4 58 51.7
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.3e-06 57.0 49 61.2
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.3e-06 57.0 58 55.2
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.3e-06 57.0 60 58.3
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 61 52.5
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.3e-06 57.0 59 59.3
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 61.2
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 38 76.3
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.7e-06 56.6 48 62.5
Zm00001eb015160 Zea mays HOM05D002974 ORTHO05D002992 1.7e-06 56.6 47 63.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 2.2e-06 56.2 42 69.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.2e-06 56.2 48 62.5
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.2e-06 56.2 48 62.5
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 2.8e-06 55.8 77 48.1
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.8e-06 55.8 50 60.0
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.8e-06 55.8 45 66.7
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.8e-06 55.8 50 60.0
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 3.7e-06 55.5 47 63.8
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.7e-06 55.5 40 67.5
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 3.7e-06 55.5 118 37.3
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 3.7e-06 55.5 55 52.7
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 3.7e-06 55.5 49 61.2
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 4.8e-06 55.1 61 55.7
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 4.8e-06 55.1 43 67.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.8e-06 55.1 48 60.4
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 4.8e-06 55.1 49 57.1
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 4.8e-06 55.1 41 68.3
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 4.8e-06 55.1 40 65.0
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 4.8e-06 55.1 40 67.5
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 6.3e-06 54.7 46 60.9
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 6.3e-06 54.7 51 58.8
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 6.3e-06 54.7 51 58.8
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 6.3e-06 54.7 51 58.8
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 6.3e-06 54.7 51 58.8
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 6.3e-06 54.7 40 67.5
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.3e-06 54.7 40 67.5
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 6.3e-06 54.7 47 63.8
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 8.2e-06 54.3 54 55.6
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 8.2e-06 54.3 56 53.6
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 8.2e-06 54.3 74 48.6
Zm00001eb395660 Zea mays HOM05D002974 ORTHO05D002992 8.2e-06 54.3 34 76.5


User provided reference genes

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