Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 2.5e-30 134.8 68 100.0
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 3.2e-22 107.8 61 90.2
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 5.5e-22 107.1 61 88.5
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 5.5e-22 107.1 61 88.5
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 1.6e-21 105.5 61 88.5
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 86.9
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 88.5
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 2.1e-21 105.1 61 86.9
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 6.1e-21 103.6 61 86.9
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 6.1e-21 103.6 61 86.9
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 6.1e-21 103.6 61 86.9
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 8.0e-21 103.2 61 86.9
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-21 103.2 61 86.9
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 1.0e-20 102.8 61 86.9
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.0e-20 102.8 61 86.9
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-20 102.4 61 86.9
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-20 102.4 61 86.9
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-20 102.4 61 86.9
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 1.4e-20 102.4 61 85.2
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 1.4e-20 102.4 61 85.2
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.8e-20 102.1 61 85.2
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.3e-20 101.7 59 88.1
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.3e-20 101.7 59 88.1
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.0e-20 101.3 61 85.2
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.0e-20 101.3 61 85.2
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 4.0e-20 100.9 61 85.2
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 4.0e-20 100.9 61 85.2
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 4.0e-20 100.9 61 85.2
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.2e-20 100.5 61 85.2
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 6.8e-20 100.1 61 85.2
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 8.8e-20 99.8 61 83.6
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 8.8e-20 99.8 61 85.2
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.8e-20 99.8 61 83.6
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 1.5e-19 99.0 58 87.9
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-19 99.0 61 85.2
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-19 99.0 61 85.2
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-19 98.6 61 83.6
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-19 98.2 59 84.7
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.6e-19 98.2 61 82.0
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-19 97.8 61 83.6
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-19 97.8 61 82.0
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.4e-19 97.4 61 83.6
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-19 97.1 61 82.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-19 97.1 63 82.5
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 5.7e-19 97.1 61 82.0
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.3e-18 95.9 58 86.2
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.8e-18 94.7 61 80.3
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-18 94.7 56 87.5
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 8.3e-18 93.2 56 85.7
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-17 92.8 56 85.7
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-17 92.8 56 83.9
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-17 91.7 56 85.7
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-17 91.7 56 85.7
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-17 91.3 61 78.7
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 5.3e-17 90.5 53 86.8
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-17 89.7 56 82.1
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-16 89.4 55 81.8
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 2.7e-16 88.2 59 79.7
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-16 87.4 56 80.4
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-16 87.4 48 89.6
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 7.7e-16 86.7 53 83.0
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-15 86.3 53 81.1
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-15 85.1 58 77.6
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.9e-15 84.7 61 73.8
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-15 84.7 54 81.5
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-15 84.7 54 81.5
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 4.7e-13 77.4 38 94.7
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 8.0e-13 76.6 38 94.7
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-11 70.9 61 70.5
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-11 69.7 48 77.1
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.8e-10 68.2 44 81.8
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 6.3e-10 67.0 54 72.2
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 4.1e-09 64.3 33 90.9
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 7.0e-09 63.5 39 82.1
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-08 62.8 38 73.7
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 1.6e-08 62.4 39 84.6
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.0e-08 62.0 48 70.8
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 5.9e-08 60.5 42 76.2
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-07 59.3 33 84.8
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-07 58.5 33 84.8
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.2e-06 54.3 37 81.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 5.5e-06 53.9 50 50.0
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 5.5e-06 53.9 40 60.0


User provided reference genes

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