Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1818.1 915 100.0
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1629.4 1011 84.3
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1500.0 1008 78.2
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1489.9 1007 78.0
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1442.9 1015 74.8
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1418.7 1015 74.2
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1345.5 1014 71.2
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1342.8 1014 69.5
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1342.8 1014 71.0
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1332.4 1016 69.5
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1323.1 1012 68.4
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1312.7 1017 67.9
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1311.6 993 68.7
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1305.4 1011 68.2
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1281.9 993 67.3
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1278.8 1013 66.3
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1276.9 983 67.3
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1276.9 998 66.9
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1276.2 995 67.1
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1272.3 997 66.8
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1271.1 998 68.8
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1269.6 997 67.2
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1268.1 998 66.6
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1266.9 1000 66.7
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1266.9 999 68.7
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1266.1 986 66.9
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1266.1 1004 66.3
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1265.8 1003 66.4
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1262.7 991 67.5
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1253.0 993 66.6
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1252.3 1010 66.0
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1249.6 990 66.0
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1249.6 990 66.0
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1249.6 999 66.5
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1248.0 998 66.3
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1247.3 997 65.9
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1241.5 1056 64.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1239.9 1010 64.4
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1239.6 997 65.7
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1236.1 1013 64.4
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1227.6 1004 64.7
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1222.2 1011 64.4
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1221.5 1010 63.6
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1219.9 1010 63.5
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1218.4 1010 63.0
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1215.7 987 64.4
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1213.7 1002 63.5
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1213.0 1005 63.7
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1211.4 978 65.3
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1210.7 990 66.2
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1205.7 986 64.5
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1204.5 1002 63.8
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1199.5 981 64.3
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1199.5 1016 64.2
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1196.0 994 63.9
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1195.3 983 64.3
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1195.3 1016 62.2
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1192.9 944 66.2
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1191.8 981 64.1
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1190.6 1003 62.6
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1188.3 1009 62.2
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1187.6 938 66.8
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1187.2 998 63.8
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1186.8 994 63.2
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1186.4 1011 62.4
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1184.9 1018 61.7
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1183.7 981 63.2
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1181.8 981 63.3
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1181.4 1001 62.2
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1180.2 1001 62.2
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1176.4 1026 61.4
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1167.1 1028 60.7
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1166.8 1016 60.7
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1114.0 998 59.4
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1106.7 1013 59.5
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1099.7 1060 55.8
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1092.0 936 62.5
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 4.4e-308 1061.2 905 62.9
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 3.1e-285 985.3 871 59.9
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 3.4e-284 981.9 909 57.2
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 3.9e-280 968.4 951 57.5
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 3.5e-273 945.3 809 62.8
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 1.0e-267 927.2 984 50.5
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 8.5e-267 924.1 759 62.6
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 1.3e-264 916.8 996 48.6
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 4.2e-250 868.6 999 49.2
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 6.7e-240 834.7 926 50.3
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 3.5e-236 822.4 737 59.8
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 9.4e-234 814.3 887 50.7
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 1.2e-228 797.3 608 65.6
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 1.7e-227 793.5 606 64.5
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 1.3e-222 777.3 685 62.2
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 4.0e-216 755.7 666 62.2
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.0e-211 739.6 682 59.5
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 2.7e-204 716.5 524 67.4
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 3.1e-192 676.4 696 54.3
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 3.8e-190 669.5 726 52.1
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 2.8e-185 653.3 608 57.1
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 9.6e-178 628.2 394 75.9
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 3.0e-171 606.7 618 56.3
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 3.2e-157 560.1 358 78.5
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 4.6e-156 556.2 566 56.9
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 6.5e-142 509.2 361 70.6
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.3e-130 470.3 322 73.0
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.8e-128 464.5 996 33.6
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 4.2e-125 453.4 923 34.0
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.6e-116 423.7 306 66.0
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 9.2e-96 355.9 224 85.3
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 6.6e-78 296.6 397 46.9
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 6.4e-73 280.0 206 66.5
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 2.4e-56 224.9 143 82.5
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 4.2e-56 224.2 136 85.3
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 4.2e-48 197.6 108 81.5
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 9.3e-48 196.4 182 58.8
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 9.3e-40 169.9 137 70.8
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.1e-31 142.1 91 74.7
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.6e-23 114.8 67 79.1
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 3.7e-20 104.8 69 69.6
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 8.2e-20 103.6 67 74.6
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 8.2e-20 103.6 67 74.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.1e-19 103.2 67 74.6
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.8e-19 102.4 67 74.6
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.8e-19 102.4 67 74.6
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.8e-19 102.4 67 74.6
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 4.1e-19 101.3 67 73.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 4.1e-19 101.3 58 82.8
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 5.3e-19 100.9 63 81.0
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.0e-18 99.0 59 78.0
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 2.0e-18 99.0 59 78.0
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.6e-18 98.6 67 73.1
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 4.5e-18 97.8 61 75.4
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.9e-18 97.4 67 70.1
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 3.2e-16 91.7 62 71.0
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 9.4e-16 90.1 59 71.2
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 8.2e-12 77.0 186 27.4
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.6e-10 72.8 71 52.1
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 2.6e-10 72.0 71 52.1
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 3.5e-10 71.6 187 26.7
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 1.1e-08 66.6 185 27.6
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 1.9e-08 65.9 58 55.2
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 3.2e-08 65.1 183 26.2
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 3.2e-08 65.1 186 26.9
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 7.2e-08 63.9 174 25.3
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 9.4e-08 63.5 207 23.2
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 9.4e-08 63.5 188 25.0
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 1.2e-07 63.2 174 28.7
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.6e-07 62.8 187 25.1
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 2.7e-07 62.0 35 80.0
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 3.6e-07 61.6 39 82.1
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 3.6e-07 61.6 39 82.1
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 3.6e-07 61.6 195 26.2
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 3.6e-07 61.6 174 26.4
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 6.1e-07 60.8 174 24.1
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 6.1e-07 60.8 175 25.7
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 8.0e-07 60.5 187 24.6
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 1.0e-06 60.1 175 25.7
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 1.0e-06 60.1 181 27.1
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.0e-06 60.1 187 25.1
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 1.4e-06 59.7 187 25.7
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 1.8e-06 59.3 195 26.2
Pp3c17_5950 Physcomitrium patens HOM05D005389 ORTHO05D316153 1.8e-06 59.3 56 51.8
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 1.8e-06 59.3 176 27.3
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 2.3e-06 58.9 187 24.6
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.3e-06 58.9 187 24.6
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 3.0e-06 58.5 187 24.6
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 3.0e-06 58.5 161 26.7
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 4.0e-06 58.2 187 24.6
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 4.0e-06 58.2 174 25.9
QL02p088183 Quercus lobata HOM05D004630 ORTHO05D005727 5.2e-06 57.8 182 26.9
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 6.8e-06 57.4 187 24.6
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 6.8e-06 57.4 187 24.6
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 6.8e-06 57.4 188 24.5
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 6.8e-06 57.4 187 25.1
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 8.8e-06 57.0 174 25.9


User provided reference genes

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