Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G018100 Prunus persica HOM05D005130 ORTHO05D006185 1.1e-59 233.0 113 100.0
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 2.0e-32 142.5 75 90.7
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 2.0e-32 142.5 75 90.7
AUR62013718 Chenopodium quinoa HOM05D005130 ORTHO05D006185 3.4e-32 141.7 84 79.8
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 3.4e-32 141.7 75 89.3
Prupe.2G068700 Prunus persica HOM05D005130 ORTHO05D006185 1.3e-31 139.8 77 89.6
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 1.7e-31 139.4 75 88.0
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 1.7e-31 139.4 75 88.0
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 2.2e-31 139.0 75 86.7
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 2.8e-31 138.7 75 86.7
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 3.7e-31 138.3 75 86.7
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 3.7e-31 138.3 75 86.7
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 3.7e-31 138.3 75 86.7
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 4.9e-31 137.9 75 86.7
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 4.9e-31 137.9 75 86.7
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 4.9e-31 137.9 75 86.7
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 4.9e-31 137.9 75 86.7
Oeu040377.1 Olea europaea HOM05D005130 ORTHO05D006185 4.9e-31 137.9 75 86.7
TPR.G4673 Trifolium pratense HOM05D005130 ORTHO05D006185 4.9e-31 137.9 75 86.7
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 6.3e-31 137.5 75 86.7
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 6.3e-31 137.5 82 82.9
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 6.3e-31 137.5 75 86.7
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 6.3e-31 137.5 77 84.4
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 8.3e-31 137.1 78 82.1
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 8.3e-31 137.1 75 84.0
Ah.05g173340 Amaranthus hybridus HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 1.1e-30 136.7 78 82.1
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 1.1e-30 136.7 85 75.3
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 1.1e-30 136.7 75 85.3
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.4e-30 136.3 76 82.9
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.4e-30 136.3 76 82.9
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
AUR62004123 Chenopodium quinoa HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.8e-30 136.0 75 85.3
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.8e-30 136.0 75 85.3
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 1.8e-30 136.0 75 85.3
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 2.4e-30 135.6 75 84.0
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 2.4e-30 135.6 75 85.3
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 2.4e-30 135.6 75 84.0
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 2.4e-30 135.6 75 84.0
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 3.1e-30 135.2 75 82.7
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 3.1e-30 135.2 75 84.0
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 4.1e-30 134.8 75 84.0
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 4.1e-30 134.8 73 87.7
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 5.4e-30 134.4 75 84.0
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 5.4e-30 134.4 75 85.3
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 9.2e-30 133.7 75 82.7
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 9.2e-30 133.7 75 82.7
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 9.2e-30 133.7 74 85.1
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 1.2e-29 133.3 75 84.0
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 1.2e-29 133.3 75 84.0
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 1.6e-29 132.9 75 82.7
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 1.6e-29 132.9 75 82.7
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 1.6e-29 132.9 75 84.0
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 1.6e-29 132.9 75 82.7
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 1.6e-29 132.9 75 82.7
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 1.6e-29 132.9 75 84.0
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 81.3
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 81.3
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 81.3
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 81.3
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 81.3
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 82.7
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 2.0e-29 132.5 75 84.0
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 81.3
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 81.3
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 81.3
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 81.3
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 81.3
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 81.3
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 80.0
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 84.0
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 2.7e-29 132.1 73 84.9
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 2.7e-29 132.1 75 82.7
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 3.5e-29 131.7 75 81.3
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 3.5e-29 131.7 75 81.3
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 3.5e-29 131.7 75 81.3
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 3.5e-29 131.7 75 81.3
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 3.5e-29 131.7 70 85.7
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 3.5e-29 131.7 75 81.3
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 3.5e-29 131.7 73 84.9
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 4.5e-29 131.3 75 82.7
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 4.5e-29 131.3 75 81.3
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 4.5e-29 131.3 75 81.3
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 4.5e-29 131.3 77 80.5
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 5.9e-29 131.0 75 81.3
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 7.8e-29 130.6 75 81.3
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 7.8e-29 130.6 75 81.3
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 1.3e-28 129.8 75 78.7
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 1.3e-28 129.8 75 78.7
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 2.3e-28 129.0 75 80.0
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 2.3e-28 129.0 75 81.3
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 2.9e-28 128.6 75 80.0
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 2.9e-28 128.6 75 78.7
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 3.8e-28 128.3 75 77.3
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 3.8e-28 128.3 75 80.0
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 3.8e-28 128.3 75 80.0
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 3.8e-28 128.3 75 80.0
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 6.6e-28 127.5 75 77.3
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 1.1e-27 126.7 75 78.7
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 1.5e-27 126.3 73 80.8
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 1.5e-27 126.3 78 73.1
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 2.5e-27 125.6 75 77.3
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 5.6e-27 124.4 94 68.1
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 5.6e-27 124.4 94 68.1
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 1.2e-26 123.2 75 77.3
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 1.2e-26 123.2 75 77.3
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 1.2e-26 123.2 75 77.3
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 1.2e-26 123.2 75 77.3
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 1.2e-26 123.2 75 76.0
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 2.1e-26 122.5 74 78.4
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 2.0e-24 115.9 111 55.0
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 8.3e-23 110.5 61 83.6
Eucgr.H04599 Eucalyptus grandis HOM05D005130 ORTHO05D006185 1.6e-21 106.3 103 56.3
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 1.0e-20 103.6 75 62.7
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 5.0e-20 101.3 75 65.3
Ciclev10023954m.g Citrus clementina HOM05D005130 ORTHO05D006185 9.5e-19 97.1 75 65.3
C03p90030 Brassica napus HOM05D005130 ORTHO05D006185 1.6e-18 96.3 80 60.0
Prupe.2G055900 Prunus persica HOM05D005130 ORTHO05D006185 2.0e-16 89.4 48 91.7
SMO203G0049 Selaginella moellendorffii HOM05D005130 ORTHO05D006185 2.0e-16 89.4 62 71.0
Cre06.g289700 Chlamydomonas reinhardtii HOM05D005130 ORTHO05D006185 9.2e-14 80.5 74 51.4
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 7.8e-13 77.4 40 90.0
Sabra17G0124900 Salix brachista HOM05D000100 ORTHO05D000052 1.7e-12 76.3 63 60.3
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 6.6e-12 74.3 43 76.7
Haze_11084 Corylus avellana HOM05D005130 ORTHO05D006185 1.1e-09 67.0 37 78.4
Psat7g198120 Pisum sativum HOM05D005130 ORTHO05D006185 1.1e-09 67.0 37 78.4
SGA_v2.0_scaffold52G19001 Striga asiatica HOM05D005130 ORTHO05D006185 1.1e-09 67.0 37 78.4
Rhsim09G0201500 Rhododendron simsii HOM05D005130 ORTHO05D006185 1.4e-09 66.6 35 82.9
COL.COLO4_25325 Corchorus olitorius HOM05D005130 ORTHO05D006185 2.3e-09 65.9 36 80.6
SHI13750 Sapria himalayana HOM05D005130 ORTHO05D006185 2.3e-09 65.9 39 74.4
Actinidia31846 Actinidia chinensis HOM05D005130 ORTHO05D006185 4.0e-09 65.1 37 78.4
Pp3c12_8100 Physcomitrium patens HOM05D005130 ORTHO05D006185 7.5e-08 60.8 38 71.1


User provided reference genes

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