Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 2.6e-92 342.0 170 100.0
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 7.2e-79 297.4 158 94.9
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 5.2e-77 291.2 158 91.8
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 5.2e-77 291.2 158 91.8
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 1.8e-74 282.7 158 89.2
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.6e-73 279.6 158 88.6
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-73 279.6 158 88.6
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-73 279.6 158 88.6
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-73 279.6 158 88.6
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-73 279.6 158 88.6
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 1.6e-70 269.6 157 84.7
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 1.6e-70 269.6 157 85.4
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 3.6e-70 268.5 157 84.1
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 3.6e-70 268.5 157 83.4
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.7e-70 268.1 157 82.2
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 4.7e-70 268.1 157 84.1
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 8.0e-70 267.3 157 84.7
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 8.0e-70 267.3 157 83.4
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 1.0e-69 266.9 157 81.5
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 2.3e-69 265.8 157 81.5
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 2.3e-69 265.8 157 83.4
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.3e-69 265.8 157 82.2
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 2.3e-69 265.8 157 82.2
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 2.3e-69 265.8 157 80.9
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 3.0e-69 265.4 157 83.4
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 3.0e-69 265.4 157 83.4
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 5.2e-69 264.6 157 81.5
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 5.2e-69 264.6 157 81.5
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 6.8e-69 264.2 157 79.6
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 6.8e-69 264.2 157 83.4
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 8.8e-69 263.8 157 83.4
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.2e-68 263.5 157 82.2
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 1.5e-68 263.1 157 82.2
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.5e-68 263.1 157 80.9
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 3.4e-68 261.9 157 82.8
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 3.4e-68 261.9 157 81.5
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 4.4e-68 261.5 157 80.3
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 4.4e-68 261.5 157 80.3
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 5.7e-68 261.2 157 82.2
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 5.7e-68 261.2 157 82.8
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 7.5e-68 260.8 157 79.6
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 9.8e-68 260.4 157 80.9
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 9.8e-68 260.4 157 82.8
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 1.3e-67 260.0 157 79.6
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.3e-67 260.0 157 81.5
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.7e-67 259.6 157 80.3
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 2.8e-67 258.8 157 80.3
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.8e-67 258.8 157 79.6
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 4.8e-67 258.1 157 77.1
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 6.3e-67 257.7 157 79.0
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 6.3e-67 257.7 157 79.6
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 2.4e-66 255.8 157 80.9
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 3.1e-66 255.4 157 79.0
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 3.1e-66 255.4 167 75.4
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 4.1e-66 255.0 157 77.7
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 7.0e-66 254.2 157 78.3
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 1.2e-65 253.4 157 77.7
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.0e-65 252.7 157 79.0
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.0e-65 252.7 157 79.0
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 5.9e-65 251.1 157 75.8
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 5.9e-65 251.1 157 78.3
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 7.7e-65 250.8 173 74.0
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 1.7e-64 249.6 157 77.1
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.9e-64 248.8 147 81.6
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 3.8e-64 248.4 157 77.1
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 3.8e-64 248.4 157 77.7
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 5.0e-64 248.1 157 76.4
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 5.0e-64 248.1 157 77.1
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 5.0e-64 248.1 157 79.6
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 6.5e-64 247.7 157 76.4
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 1.1e-63 246.9 157 75.2
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.1e-63 246.9 188 69.1
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.5e-63 246.5 157 75.8
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 2.5e-63 245.7 205 63.4
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 3.2e-63 245.4 172 71.5
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 4.2e-63 245.0 157 75.2
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 4.2e-63 245.0 157 75.2
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 4.2e-63 245.0 157 75.2
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 4.2e-63 245.0 157 79.0
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 9.5e-63 243.8 157 74.5
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 4.7e-62 241.5 157 73.2
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.8e-61 239.6 153 75.8
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 1.8e-61 239.6 153 75.8
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.8e-61 239.6 153 75.8
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 5.2e-61 238.0 157 70.1
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 3.4e-60 235.3 157 73.2
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 4.4e-60 235.0 155 74.2
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 4.9e-59 231.5 157 72.0
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 6.3e-59 231.1 157 70.7
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 1.1e-58 230.3 157 71.3
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 5.4e-58 228.0 157 70.1
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 9.2e-58 227.3 213 58.7
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 4.5e-57 224.9 157 70.1
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 4.5e-57 224.9 157 69.4
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 5.9e-57 224.6 153 71.9
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 5.9e-57 224.6 157 70.1
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 7.7e-57 224.2 153 72.5
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.3e-56 223.4 132 82.6
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 1.3e-56 223.4 157 69.4
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 8.0e-54 214.2 178 65.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.8e-53 213.0 150 70.0
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.6e-49 199.9 124 71.8
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 9.5e-47 190.7 157 57.3
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 8.0e-46 187.6 151 61.6
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.4e-45 186.8 151 61.6
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.0e-44 183.0 148 68.2
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.0e-44 183.0 151 60.3
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 3.4e-44 182.2 157 54.1
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.4e-42 176.8 157 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 5.0e-40 168.3 157 49.7
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 8.6e-40 167.5 84 88.1
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.1e-37 159.1 115 68.7
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 4.6e-33 145.2 157 47.8
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 3.3e-31 139.0 159 42.1
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 9.5e-31 137.5 158 44.3
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 1.2e-30 137.1 100 67.0
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 5.8e-28 128.3 158 39.9
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 9.2e-26 120.9 157 49.0
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 5.6e-23 111.7 76 78.9
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 9.6e-15 84.3 100 42.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 2.1e-06 56.6 43 62.8


User provided reference genes

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