Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G015600 Prunus persica HOM05D003512 ORTHO05D004013 1.0e-34 149.4 73 100.0
FAN24G0321 Fragaria x ananassa HOM05D003512 ORTHO05D004013 1.2e-19 99.4 52 90.4
FvH4_2g19960 Fragaria vesca HOM05D003512 ORTHO05D004013 2.8e-19 98.2 49 93.9
FAN15G0220 Fragaria x ananassa HOM05D003512 ORTHO05D004013 2.8e-19 98.2 49 93.9
FAN27G0931 Fragaria x ananassa HOM05D003512 ORTHO05D004013 2.8e-19 98.2 49 93.9
MD10G1171800 Malus domestica HOM05D003512 ORTHO05D004013 2.8e-19 98.2 49 93.9
Prupe.8G210000 Prunus persica HOM05D003512 ORTHO05D004013 2.8e-19 98.2 49 93.9
RcHm_v2.0_Chr6g0285621 Rosa chinensis HOM05D003512 ORTHO05D004013 2.8e-19 98.2 49 93.9
MD05G1183900 Malus domestica HOM05D003512 ORTHO05D004013 6.1e-19 97.1 49 91.8
Rhsim13G0041600 Rhododendron simsii HOM05D003512 ORTHO05D004013 8.0e-19 96.7 49 89.8
Sabra02G0192900 Salix brachista HOM05D003512 ORTHO05D004013 8.0e-19 96.7 67 67.2
Medtr7g099390 Medicago truncatula HOM05D003512 ORTHO05D004013 3.0e-18 94.7 49 87.8
Nitab4.5_0000385g0230 Nicotiana tabacum HOM05D003512 ORTHO05D004013 4.0e-18 94.4 50 84.0
vmacro02722 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 4.0e-18 94.4 49 87.8
Glyma.10G042000 Glycine max HOM05D003512 ORTHO05D004013 5.2e-18 94.0 49 87.8
Glyma.10G042100 Glycine max HOM05D003512 ORTHO05D004013 5.2e-18 94.0 49 87.8
Glyma.13G129400 Glycine max HOM05D003512 ORTHO05D004013 5.2e-18 94.0 49 87.8
Glyma.13G129500 Glycine max HOM05D003512 ORTHO05D004013 5.2e-18 94.0 49 87.8
Nitab4.5_0004333g0020 Nicotiana tabacum HOM05D003512 ORTHO05D004013 5.2e-18 94.0 49 83.7
Phvul.007G155500 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 5.2e-18 94.0 49 87.8
Aqoxy5G00078 Aquilegia oxysepala HOM05D003512 ORTHO05D004013 6.8e-18 93.6 49 87.8
CSS0050291 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 6.8e-18 93.6 49 87.8
SGA_v2.0_scaffold1G00682 Striga asiatica HOM05D003512 ORTHO05D004013 6.8e-18 93.6 49 85.7
Dinv19249 Davidia involucrata HOM05D003512 ORTHO05D004013 8.9e-18 93.2 49 85.7
Hma1.2p1_0123F.1_g058160 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 8.9e-18 93.2 49 85.7
Rhsim05G0169700 Rhododendron simsii HOM05D003512 ORTHO05D004013 8.9e-18 93.2 49 85.7
CiPaw.03G273300 Carya illinoinensis HOM05D003512 ORTHO05D004013 1.2e-17 92.8 49 87.8
CiPaw.04G192200 Carya illinoinensis HOM05D003512 ORTHO05D004013 1.2e-17 92.8 49 87.8
Peaxi162Scf00517g00118 Petunia axillaris HOM05D003512 ORTHO05D004013 1.2e-17 92.8 49 83.7
QL09p043416 Quercus lobata HOM05D003512 ORTHO05D004013 1.2e-17 92.8 49 87.8
Actinidia30108 Actinidia chinensis HOM05D003512 ORTHO05D004013 1.5e-17 92.4 49 85.7
Ca_08765_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 1.5e-17 92.4 49 85.7
Lalb_Chr25g0289731 Lupinus albus HOM05D003512 ORTHO05D004013 1.5e-17 92.4 49 87.8
TAR365G0283 Trochodendron aralioides HOM05D003512 ORTHO05D004013 1.5e-17 92.4 49 85.7
vmacro19972 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 1.5e-17 92.4 49 85.7
Ah.08g213830 Amaranthus hybridus HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
Cc01_g17500 Coffea canephora HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
Migut.D00498 Erythranthe guttata HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
Manes.13G042400 Manihot esculenta HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 87.8
Oeu017338.1 Olea europaea HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
Oeu039643.2 Olea europaea HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
Oeu047197.1 Olea europaea HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
Peaxi162Scf00043g00067 Petunia axillaris HOM05D003512 ORTHO05D004013 2.0e-17 92.0 49 83.7
AL3G47830 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 2.6e-17 91.7 50 82.0
arahy.Tifrunner.gnm1.ann1.110G34 Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
arahy.Tifrunner.gnm1.ann1.DHZ2RQ Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
arahy.Tifrunner.gnm1.ann1.HB1P9N Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
arahy.Tifrunner.gnm1.ann1.PI6GK2 Arachis hypogaea HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
MSTRG.21447 Avicennia marina HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 83.7
CAN.G771.48 Capsicum annuum HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
Ca_09628_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
Dinv43039 Davidia involucrata HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 83.7
ECA236G1700 Erigeron canadensis HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 83.7
ECA247G0853 Erigeron canadensis HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 83.7
Eucgr.H00828 Eucalyptus grandis HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
HanXRQChr10g0287201 Helianthus annuus HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 83.7
HanXRQChr13g0408961 Helianthus annuus HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 83.7
Lj5g0026666 Lotus japonicus HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
Phvul.008G133700 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
Sed0015250 Sechium edule HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
TPR.G20608 Trifolium pratense HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
VMungo0720G2276 Vigna mungo HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
GSVIVG01028481001 Vitis vinifera HOM05D003512 ORTHO05D004013 2.6e-17 91.7 49 85.7
Ciclev10022750m.g Citrus clementina HOM05D003512 ORTHO05D004013 3.4e-17 91.3 49 85.7
Duzib138G0098 Durio zibethinus HOM05D003512 ORTHO05D004013 3.4e-17 91.3 49 85.7
SalBow6G4606 Salvia bowleyana HOM05D003512 ORTHO05D004013 3.4e-17 91.3 49 81.6
TWI23G0432 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 3.4e-17 91.3 49 85.7
TWI32G0368 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 3.4e-17 91.3 49 85.7
Atru.chr5.1920 Acer truncatum HOM05D003512 ORTHO05D004013 4.4e-17 90.9 49 85.7
AUR62025395 Chenopodium quinoa HOM05D003512 ORTHO05D004013 4.4e-17 90.9 49 81.6
Manes.12G040000 Manihot esculenta HOM05D003512 ORTHO05D004013 4.4e-17 90.9 49 85.7
Nitab4.5_0004777g0040 Nicotiana tabacum HOM05D003512 ORTHO05D004013 4.4e-17 90.9 49 83.7
Potri.002G253800 Populus trichocarpa HOM05D003512 ORTHO05D004013 4.4e-17 90.9 49 83.7
arahy.Tifrunner.gnm1.ann1.QW0L8Q Arachis hypogaea HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 83.7
arahy.Tifrunner.gnm1.ann1.TN6DUA Arachis hypogaea HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 83.7
AUR62008851 Chenopodium quinoa HOM05D003512 ORTHO05D004013 5.7e-17 90.5 48 83.3
Eucgr.B02162 Eucalyptus grandis HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 85.7
HanXRQChr11g0327281 Helianthus annuus HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 81.6
HanXRQChr15g0468101 Helianthus annuus HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 81.6
Nitab4.5_0001557g0070 Nicotiana tabacum HOM05D003512 ORTHO05D004013 5.7e-17 90.5 48 85.4
Oeu026192.1 Olea europaea HOM05D003512 ORTHO05D004013 5.7e-17 90.5 48 83.3
Sed0000934 Sechium edule HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 83.7
Hund18341 Selenicereus undatus HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 81.6
Solyc09g063130.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 83.7
Sopen09g025300 Solanum pennellii HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 83.7
PGSC0003DMG400022022 Solanum tuberosum HOM05D003512 ORTHO05D004013 5.7e-17 90.5 49 83.7
Lsat_1_v5_gn_9_12001 Lactuca sativa HOM05D003512 ORTHO05D004013 7.5e-17 90.1 49 81.6
Solyc06g083680.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 7.5e-17 90.1 49 81.6
Sopen06g035100 Solanum pennellii HOM05D003512 ORTHO05D004013 7.5e-17 90.1 49 81.6
PGSC0003DMG400020154 Solanum tuberosum HOM05D003512 ORTHO05D004013 7.5e-17 90.1 49 81.6
Zm00001eb096870 Zea mays HOM05D003512 ORTHO05D004013 7.5e-17 90.1 49 83.7
Zm00001eb306070 Zea mays HOM05D003512 ORTHO05D004013 7.5e-17 90.1 49 83.7
AL7G23750 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
AT4G28750 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BcaC07g38359 Brassica carinata HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BcaNung01368 Brassica carinata HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BcaNung07172 Brassica carinata HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
A01p09160 Brassica napus HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
A08p19920 Brassica napus HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
C01p10750 Brassica napus HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
C08p11070 Brassica napus HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BolC1t01034H Brassica oleracea HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BolC8t48776H Brassica oleracea HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BraA01t00862Z Brassica rapa HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
BraA08t33949Z Brassica rapa HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
Carub.0007s1189 Capsella rubella HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
CARHR236540 Cardamine hirsuta HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
Lalb_Chr02g0152921 Lupinus albus HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 85.7
Sp7g26760 Schrenkiella parvula HOM05D003512 ORTHO05D004013 9.8e-17 89.7 49 83.7
ClCG11G010230 Citrullus lanatus HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 81.6
Haze_24736 Corylus avellana HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 83.7
CsaV3_2G010090 Cucumis sativus L. HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 81.6
Lalb_Chr06g0170911 Lupinus albus HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 85.7
Lalb_Chr21g0314191 Lupinus albus HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 85.7
Medtr1g069235 Medicago truncatula HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 83.7
PSO764G0144 Papaver somniferum HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 83.7
PSO832G4467 Papaver somniferum HOM05D003512 ORTHO05D004013 1.3e-16 89.4 49 83.7
COL.COLO4_36321 Corchorus olitorius HOM05D003512 ORTHO05D004013 1.7e-16 89.0 49 83.7
Lsat_1_v5_gn_2_15600 Lactuca sativa HOM05D003512 ORTHO05D004013 1.7e-16 89.0 49 79.6
Lsat_1_v5_gn_8_90440 Lactuca sativa HOM05D003512 ORTHO05D004013 1.7e-16 89.0 49 81.6
TWI34G1801 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.7e-16 89.0 49 83.7
TWI59G0010 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.7e-16 89.0 49 83.7
Aa31LG2G21620 Aethionema arabicum HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 81.6
Carub.0003s3459 Capsella rubella HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 79.6
Cpa.g.sc8.213 Carica papaya HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 83.7
Duzib211G0535 Durio zibethinus HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 83.7
Migut.N02242 Erythranthe guttata HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 81.6
Thhalv10002106m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 79.6
PGR142G3520 Punica granatum HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 81.6
Sp3g33490 Schrenkiella parvula HOM05D003512 ORTHO05D004013 2.2e-16 88.6 49 79.6
BcaB03g12587 Brassica carinata HOM05D003512 ORTHO05D004013 2.8e-16 88.2 49 83.7
Gohir.D08G056700 Gossypium hirsutum HOM05D003512 ORTHO05D004013 2.8e-16 88.2 49 81.6
Gorai.004G057800 Gossypium raimondii HOM05D003512 ORTHO05D004013 2.8e-16 88.2 49 81.6
COL.COLO4_07003 Corchorus olitorius HOM05D003512 ORTHO05D004013 3.7e-16 87.8 49 83.7
THA.LOC104804030 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.7e-16 87.8 49 81.6
THA.LOC104820062 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 3.7e-16 87.8 49 81.6
Thecc.05G265600 Theobroma cacao HOM05D003512 ORTHO05D004013 3.7e-16 87.8 49 81.6
AT2G20260 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 4.9e-16 87.4 49 79.6
Gohir.A08G046200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.9e-16 87.4 49 81.6
Gohir.A11G135000 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.9e-16 87.4 49 81.6
Gohir.D11G141200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.9e-16 87.4 49 81.6
Gorai.007G151500 Gossypium raimondii HOM05D003512 ORTHO05D004013 4.9e-16 87.4 49 81.6
CDE02G1659 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 6.3e-16 87.0 48 83.3
CDE09G0441 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 6.3e-16 87.0 48 83.3
Duzib133G0561 Durio zibethinus HOM05D003512 ORTHO05D004013 6.3e-16 87.0 49 81.6
Gohir.A07G202600 Gossypium hirsutum HOM05D003512 ORTHO05D004013 6.3e-16 87.0 49 81.6
Gohir.D07G208800 Gossypium hirsutum HOM05D003512 ORTHO05D004013 6.3e-16 87.0 49 81.6
Gorai.001G235800 Gossypium raimondii HOM05D003512 ORTHO05D004013 6.3e-16 87.0 49 81.6
Thecc.01G245400 Theobroma cacao HOM05D003512 ORTHO05D004013 6.3e-16 87.0 49 81.6
Aa31LG8G17250 Aethionema arabicum HOM05D003512 ORTHO05D004013 8.3e-16 86.7 49 79.6
BcaC06g32605 Brassica carinata HOM05D003512 ORTHO05D004013 8.3e-16 86.7 49 81.6
CARHR110760 Cardamine hirsuta HOM05D003512 ORTHO05D004013 8.3e-16 86.7 49 79.6
DCAR_012618 Daucus carota HOM05D003512 ORTHO05D004013 8.3e-16 86.7 48 83.3
ATR0787G081 Amborella trichopoda HOM05D003512 ORTHO05D004013 1.1e-15 86.3 49 81.6
Os07g0435300 Oryza sativa ssp. japonica HOM05D003512 ORTHO05D004013 1.1e-15 86.3 49 81.6
SEGI_17443 Sequoiadendron giganteum HOM05D003512 ORTHO05D004013 1.1e-15 86.3 49 79.6
TAR362G0114 Trochodendron aralioides HOM05D003512 ORTHO05D004013 1.1e-15 86.3 48 79.2
HPP92_027295 Vanilla planifolia HOM05D003512 ORTHO05D004013 1.1e-15 86.3 49 79.6
Hund21755 Selenicereus undatus HOM05D003512 ORTHO05D004013 1.4e-15 85.9 49 79.6
THA.LOC104814542 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.4e-15 85.9 49 79.6
CANSAT01G3044 Cannabis sativa HOM05D003512 ORTHO05D004013 1.8e-15 85.5 49 77.6
Ah.15g093440 Amaranthus hybridus HOM05D003512 ORTHO05D004013 4.1e-15 84.3 58 70.7
DCAR_018535 Daucus carota HOM05D003512 ORTHO05D004013 4.1e-15 84.3 48 81.2
HanXRQChr01g0014791 Helianthus annuus HOM05D003512 ORTHO05D004013 5.4e-15 84.0 49 75.5
CAN.G311.8 Capsicum annuum HOM05D003512 ORTHO05D004013 7.0e-15 83.6 44 84.1
unitig_22.g6316 Utricularia gibba HOM05D003512 ORTHO05D004013 9.2e-15 83.2 49 71.4
CSS0026330 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 4.6e-14 80.9 49 75.5
unitig_699.g19325 Utricularia gibba HOM05D003512 ORTHO05D004013 4.6e-14 80.9 48 70.8
unitig_85.g27272 Utricularia gibba HOM05D003512 ORTHO05D004013 7.8e-14 80.1 49 69.4
Pp3c20_640 Physcomitrium patens HOM05D003512 ORTHO05D004013 8.6e-13 76.6 48 72.9
Pp3c23_22230 Physcomitrium patens HOM05D003512 ORTHO05D004013 8.6e-13 76.6 48 72.9
Pp3c24_20960 Physcomitrium patens HOM05D003512 ORTHO05D004013 8.6e-13 76.6 48 72.9
SMO201G0191 Selaginella moellendorffii HOM05D003512 ORTHO05D004013 2.1e-11 72.0 48 70.8
AagrBONN_evm.TU.Sc2ySwM_344.4760 Anthoceros agrestis HOM05D003512 ORTHO05D004013 4.7e-11 70.9 48 68.8
Actinidia37567 Actinidia chinensis HOM05D003512 ORTHO05D004013 6.1e-11 70.5 37 86.5
CBR_g17684 Chara braunii HOM05D003512 ORTHO05D004013 1.4e-10 69.3 49 69.4
Mapoly0061s0118 Marchantia polymorpha HOM05D003512 ORTHO05D004013 2.3e-10 68.6 47 66.0
MCO05G318 Micromonas commoda HOM05D003512 ORTHO05D004013 5.2e-10 67.4 49 67.3
PRCOL_00005723 Prasinoderma coloniale HOM05D003512 ORTHO05D004013 5.2e-10 67.4 48 70.8
Cre10.g420350 Chlamydomonas reinhardtii HOM05D003512 ORTHO05D004013 9.8e-09 63.2 48 64.6
Lsat_1_v5_gn_5_179160 Lactuca sativa HOM05D003512 ORTHO05D004013 2.0e-06 55.5 35 71.4
Hma1.2p1_1393F.1_g280270 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 7.8e-06 53.5 26 92.3


User provided reference genes

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