Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 2536.1 1253 100.0
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1836.6 1255 74.7
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1757.3 1260 71.3
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1667.9 1261 68.3
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1666.0 1261 68.2
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1666.0 1260 67.8
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1659.0 1272 67.7
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1372.5 1291 58.1
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1323.5 1280 56.6
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1312.4 1316 55.8
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1308.9 1257 55.8
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1284.2 1228 56.8
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1265.0 1333 53.3
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 1246.9 1275 54.0
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 1231.1 1345 52.3
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 1229.9 1267 53.2
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 0.0e+00 1215.7 1261 53.0
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1203.3 1321 51.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1185.2 1312 50.4
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1183.7 1282 51.3
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1183.7 1273 52.3
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 0.0e+00 1171.8 1270 52.0
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1167.9 1278 52.1
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1166.8 1284 51.5
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 1160.6 1274 51.6
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 0.0e+00 1156.0 1279 51.4
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 0.0e+00 1148.3 1280 50.5
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 0.0e+00 1142.9 1259 52.1
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1142.1 1291 51.1
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 0.0e+00 1115.9 1271 50.1
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 0.0e+00 1095.9 1288 49.7
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 0.0e+00 1086.6 1070 56.0
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.8e-310 1068.5 1293 48.4
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 2.1e-308 1062.8 1297 47.9
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.4e-301 1040.0 1264 48.2
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 1.3e-297 1026.9 1095 51.8
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 1.8e-296 1023.1 1273 47.4
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 3.1e-296 1022.3 1275 47.5
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 8.5e-294 1014.2 1256 47.0
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 9.4e-293 1010.7 1256 46.7
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.2e-292 1010.4 1307 44.8
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 5.2e-291 1005.0 1253 46.9
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 4.4e-290 1001.9 1293 46.2
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 1.1e-288 997.3 1269 47.9
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 2.4e-288 996.1 1065 52.5
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 6.1e-284 981.5 1478 41.7
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.7e-281 973.4 1289 45.5
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 2.0e-279 966.5 1288 44.5
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 2.1e-276 956.4 1293 44.5
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 3.3e-269 932.6 1284 44.6
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 7.8e-263 911.4 1301 43.4
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 4.7e-260 902.1 1309 43.8
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 4.4e-258 895.6 1260 43.1
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 8.6e-254 881.3 832 55.2
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 1.8e-251 873.6 987 49.9
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 3.4e-250 869.4 1328 41.4
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 3.7e-249 865.9 1307 40.9
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.1e-245 854.4 849 53.5
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 1.5e-245 854.0 1250 41.5
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 7.6e-242 841.6 1255 41.8
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 8.6e-238 828.2 1255 40.4
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 1.6e-236 823.9 1257 41.1
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 4.7e-236 822.4 892 52.5
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.8e-235 820.5 1257 41.1
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 4.9e-233 812.4 1256 40.9
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 3.2e-232 809.7 1257 40.1
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 1.6e-231 807.4 1259 39.7
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 7.8e-231 805.1 1272 41.2
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 1.1e-229 801.2 1174 42.1
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.5e-229 800.8 1259 39.9
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.4e-219 767.7 1299 39.1
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 4.5e-218 762.7 845 49.6
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 2.9e-209 733.4 1154 42.1
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 1.9e-208 730.7 926 47.8
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 5.5e-200 702.6 903 44.2
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 7.7e-194 682.2 897 44.3
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 2.5e-192 677.2 1263 36.4
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 1.5e-176 624.8 1106 38.4
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 4.2e-176 623.2 1499 31.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 4.5e-154 550.1 623 49.0
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 2.3e-142 511.1 897 37.7
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 2.5e-136 491.1 370 65.9
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 7.3e-136 489.6 374 66.8
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 1.7e-132 478.4 475 52.2
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 2.3e-129 468.0 384 61.2
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 4.3e-128 463.8 601 43.1
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 2.1e-127 461.5 769 36.4
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 2.1e-127 461.5 1305 28.8
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.6e-125 454.5 394 58.1
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 7.6e-125 453.0 1127 30.2
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 1.1e-123 449.1 375 61.6
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 4.3e-120 437.2 871 34.1
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.1e-118 432.6 419 54.9
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 5.6e-104 383.6 318 59.7
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 5.6e-96 357.1 410 49.3
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.6e-74 285.8 282 52.1
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 1.1e-70 273.1 327 52.0
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.4e-70 271.9 520 34.4
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 3.1e-70 271.6 253 56.5
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 1.0e-68 266.5 445 42.7
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 8.2e-63 246.9 1055 24.5
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 6.5e-60 237.3 328 42.7
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 6.5e-60 237.3 328 42.7
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 5.5e-59 234.2 206 59.7
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 2.3e-57 228.8 203 59.1
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 6.3e-55 220.7 251 46.2
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.9e-52 211.8 522 30.7
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 3.8e-52 211.5 182 57.7
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 1.0e-44 186.8 580 25.0
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 2.5e-43 182.2 204 48.5
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.6e-34 151.8 323 36.2
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 6.8e-33 147.5 297 39.1
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 3.4e-32 145.2 151 53.0
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 2.0e-29 136.0 348 29.6
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 3.5e-29 135.2 189 41.3
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 3.3e-27 128.6 218 36.2
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.3e-25 122.5 342 32.5
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.1e-25 122.1 133 47.4
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 1.4e-22 113.2 183 38.8
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 4.3e-19 101.7 316 29.4
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 1.6e-18 99.8 138 43.5
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 2.1e-18 99.4 95 51.6
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.2e-16 93.6 82 63.4
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 3.4e-16 92.0 116 39.7
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.3e-15 90.1 151 34.4
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 5.4e-14 84.7 89 53.9
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 9.2e-14 84.0 82 61.0
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.2e-13 83.6 82 61.0
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 3.5e-13 82.0 94 43.6
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 6.6e-12 77.8 82 56.1
Nitab4.5_0002179g0020 Nicotiana tabacum HOM05D005395 ORTHO05D006352 3.3e-11 75.5 166 36.1
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 2.4e-09 69.3 199 33.7
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 3.1e-09 68.9 100 44.0
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 8.9e-09 67.4 70 50.0
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 1.2e-08 67.0 51 60.8
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 2.6e-08 65.9 55 56.4
BcaC06g35590 Brassica carinata HOM05D033522 ORTHO05D024133 1.3e-07 63.5 95 41.1
BcaC09g50095 Brassica carinata HOM05D034322 ORTHO05D024133 4.2e-06 58.5 53 58.5
Dinv18440 Davidia involucrata HOM05D005395 ORTHO05D006352 5.4e-06 58.2 47 59.6
BolC3t19073H Brassica oleracea HOM05D005395 ORTHO05D024133 7.1e-06 57.8 42 64.3


User provided reference genes

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