Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.7e-35 152.1 75 100.0
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 5.7e-28 127.1 66 92.4
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 9.7e-28 126.3 67 88.1
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.3e-27 125.9 67 88.1
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.3e-27 125.9 67 88.1
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 3.1e-26 121.3 65 87.7
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.6e-25 118.2 66 84.8
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.7e-25 116.7 66 78.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 7.7e-25 116.7 65 81.5
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.3e-24 115.9 66 80.3
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 2.2e-24 115.2 71 77.5
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 6.5e-24 113.6 65 83.1
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.9e-23 112.1 67 77.6
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 7.2e-23 110.2 66 75.8
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.2e-22 109.4 65 81.5
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.2e-22 109.4 66 77.3
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 2.1e-22 108.6 66 72.7
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.1e-22 108.6 67 77.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 2.1e-22 108.6 66 77.3
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.6e-22 107.8 68 75.0
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-21 106.3 68 75.0
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.4e-21 105.9 64 76.6
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.8e-21 105.5 67 73.1
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.8e-21 105.5 64 75.0
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.9e-21 104.4 64 75.0
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 3.9e-21 104.4 64 75.0
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 6.7e-21 103.6 66 75.8
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.8e-21 103.2 65 76.9
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.5e-20 102.4 64 75.0
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 2.6e-20 101.7 66 74.2
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 5.7e-20 100.5 65 72.3
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 5.7e-20 100.5 65 72.3
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 9.7e-20 99.8 65 72.3
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 9.7e-20 99.8 64 70.3
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.2e-19 98.6 67 70.1
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 3.7e-19 97.8 65 69.2
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 4.8e-19 97.4 64 68.8
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.3e-19 97.1 66 71.2
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.3e-19 97.1 66 71.2
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.1e-18 96.3 64 75.0
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.4e-18 95.9 66 69.7
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.4e-18 95.9 64 67.2
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.4e-18 95.9 64 67.2
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.4e-18 95.1 63 71.4
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.1e-18 94.7 68 69.1
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.6e-17 92.4 66 63.6
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-17 92.4 65 67.7
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.6e-17 92.4 72 63.9
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 4.5e-17 90.9 69 60.9
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 5.9e-17 90.5 65 64.6
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 5.9e-17 90.5 65 64.6
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 5.9e-17 90.5 65 64.6
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 7.7e-17 90.1 66 60.6
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.3e-16 89.4 65 63.1
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 3.8e-16 87.8 66 60.6
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 3.8e-16 87.8 66 60.6
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 3.8e-16 87.8 66 60.6
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 5.0e-16 87.4 65 61.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 5.0e-16 87.4 65 61.5
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 6.5e-16 87.0 66 66.7
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 8.5e-16 86.7 66 60.6
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.1e-15 86.3 62 72.6
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.5e-15 85.1 66 57.6
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.5e-15 85.1 66 65.2
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 3.2e-15 84.7 60 65.0
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.2e-15 83.6 66 65.2
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 7.2e-15 83.6 66 65.2
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 7.2e-15 83.6 66 62.1
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 7.2e-15 83.6 66 63.6
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.2e-14 82.8 59 66.1
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.6e-14 82.4 62 59.7
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-14 82.0 66 63.6
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 2.1e-14 82.0 66 63.6
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 2.7e-14 81.6 66 63.6
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 3.6e-14 81.3 57 63.2
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 3.6e-14 81.3 57 63.2
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.6e-14 81.3 66 63.6
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.6e-14 81.3 65 56.9
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.6e-14 81.3 65 56.9
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 4.7e-14 80.9 66 63.6
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.7e-14 80.9 66 62.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.1e-14 80.5 66 60.6
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.1e-14 80.5 66 62.1
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.1e-14 80.5 56 71.4
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.0e-13 79.7 65 56.9
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.0e-13 79.7 62 66.1
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.0e-13 79.7 66 57.6
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.4e-13 79.3 57 70.2
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.4e-13 79.3 65 56.9
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 1.8e-13 79.0 65 55.4
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 1.8e-13 79.0 65 55.4
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.3e-13 78.6 50 78.0
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.0e-13 78.2 64 62.5
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.0e-13 78.2 58 69.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 3.0e-13 78.2 58 69.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 4.0e-13 77.8 62 64.5
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 5.2e-13 77.4 67 55.2
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 5.2e-13 77.4 65 53.8
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 5.2e-13 77.4 65 53.8
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 5.2e-13 77.4 65 53.8
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 5.2e-13 77.4 67 55.2
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.8e-13 77.0 67 58.2
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 6.8e-13 77.0 62 64.5
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 6.8e-13 77.0 51 72.5
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 8.8e-13 76.6 60 56.7
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 8.8e-13 76.6 66 59.1
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 8.8e-13 76.6 61 62.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.2e-12 76.3 57 68.4
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.2e-12 76.3 64 56.2
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 1.2e-12 76.3 66 59.1
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.2e-12 76.3 61 59.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.2e-12 76.3 61 59.0
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.5e-12 75.9 59 64.4
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.5e-12 75.9 59 64.4
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.0e-12 75.5 59 62.7
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 2.0e-12 75.5 66 56.1
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.0e-12 75.5 58 63.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 2.0e-12 75.5 66 56.1
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 2.6e-12 75.1 62 62.9
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.4e-12 74.7 57 66.7
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.4e-12 74.7 62 62.9
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.4e-12 74.3 62 56.5
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.4e-12 74.3 62 56.5
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 7.5e-12 73.6 51 70.6
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-11 72.4 62 59.7
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-11 72.4 62 59.7
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-11 72.0 62 58.1
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-11 72.0 62 58.1
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.2e-11 72.0 57 61.4
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 4.8e-11 70.9 62 54.8
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 8.3e-11 70.1 64 59.4
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.1e-10 69.7 51 70.6
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 4.1e-10 67.8 64 56.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.3e-10 67.4 62 54.8
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 7.0e-10 67.0 51 60.8
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 9.1e-10 66.6 66 53.0
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.6e-09 65.9 57 57.9
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.7e-09 65.1 51 66.7
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 3.5e-09 64.7 66 51.5
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 7.7e-09 63.5 62 51.6
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.0e-08 63.2 52 55.8
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.0e-08 63.2 66 48.5
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.3e-08 62.8 39 82.1
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.3e-08 62.8 62 54.8
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 6.5e-08 60.5 65 47.7
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.5e-08 60.5 52 55.8
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.5e-08 60.5 50 58.0
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 6.5e-08 60.5 64 50.0
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.5e-08 60.5 48 64.6
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 8.5e-08 60.1 50 56.0
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 8.5e-08 60.1 50 56.0
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 48.4
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 45.2
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 4.2e-07 57.8 62 45.2
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 5.5e-07 57.4 66 48.5
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 9.4e-07 56.6 64 48.4
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 2.7e-06 55.1 50 52.0
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 6.1e-06 53.9 58 50.0


User provided reference genes

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