Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.5e-207 726.1 401 100.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 7.7e-164 580.9 406 81.5
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.0e-160 570.5 405 79.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 7.0e-141 504.6 411 71.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-136 490.7 410 70.2
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.9e-134 482.6 421 67.5
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-134 482.3 415 69.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.4e-134 481.5 414 67.6
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-131 473.0 415 68.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.8e-112 410.2 405 58.5
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-110 404.1 405 58.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.5e-106 390.6 401 54.4
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.9e-101 373.6 406 55.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 3.2e-101 372.9 406 54.2
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.7e-100 369.8 406 55.2
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 5.6e-98 362.1 389 54.5
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 7.3e-98 361.7 407 51.4
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.6e-97 360.5 405 51.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 3.1e-96 356.3 421 55.6
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 5.3e-96 355.5 399 52.1
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.0e-96 354.8 404 53.0
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.0e-96 354.8 402 51.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.8e-95 352.1 408 50.7
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 7.6e-95 351.7 416 50.7
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.2e-94 350.1 402 50.0
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.9e-94 349.7 401 49.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 6.4e-94 348.6 398 50.8
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 6.4e-94 348.6 400 52.5
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.9e-93 347.1 422 48.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.0e-91 341.3 415 48.9
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.3e-91 340.9 408 50.2
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.8e-91 340.5 363 55.9
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.3e-91 340.1 438 47.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.9e-91 339.3 436 48.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 7.4e-90 335.1 409 48.9
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 7.4e-90 335.1 402 50.7
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.3e-89 334.3 409 50.6
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.6e-89 334.0 414 50.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.6e-89 332.8 401 49.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 5.8e-87 325.5 416 49.3
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 7.6e-87 325.1 407 50.1
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 9.9e-87 324.7 412 48.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 6.4e-86 322.0 407 49.6
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.2e-85 319.7 404 48.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.2e-84 317.8 419 48.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.1e-84 317.0 405 46.7
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.6e-84 315.8 399 48.9
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.9e-84 315.1 410 47.3
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.9e-83 312.8 426 46.2
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.6e-82 308.9 413 48.4
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 8.1e-81 305.1 404 46.0
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.0e-80 302.8 403 45.2
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.4e-79 299.7 409 44.3
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.9e-78 295.8 407 46.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 8.4e-78 295.0 422 47.9
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-77 294.3 428 47.0
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.6e-76 290.8 412 43.4
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.6e-76 290.8 412 43.4
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.3e-75 287.0 419 43.7
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 8.7e-75 285.0 406 44.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.5e-74 284.3 422 46.7
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 7.4e-74 282.0 349 53.3
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.2e-73 278.5 404 48.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-71 274.6 430 40.9
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.0e-71 273.9 359 47.9
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 5.9e-71 272.3 403 44.2
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 5.0e-70 269.2 392 43.1
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 5.0e-70 269.2 445 42.0
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 5.0e-70 269.2 421 42.5
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.5e-70 268.9 301 53.5
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.4e-69 267.7 413 41.2
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.2e-69 266.5 421 42.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.6e-68 264.2 424 44.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.7e-68 263.5 413 43.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.6e-68 263.1 421 42.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.3e-67 260.4 287 55.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.7e-67 258.5 426 41.5
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.5e-66 256.9 414 40.1
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 5.7e-66 255.8 422 41.0
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 7.4e-66 255.4 403 41.2
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.7e-65 253.1 423 40.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 6.3e-65 252.3 412 41.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.4e-64 251.1 428 40.0
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.6e-63 246.9 406 42.1
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.4e-63 246.5 427 40.7
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 5.9e-63 245.7 429 39.2
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.2e-62 243.8 442 39.4
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 5.0e-62 242.7 435 40.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 5.0e-62 242.7 437 39.6
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.4e-61 241.1 428 40.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 3.2e-61 240.0 432 38.4
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.6e-60 236.1 399 41.1
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.1e-60 235.7 356 44.4
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 3.9e-59 233.0 424 38.0
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 6.7e-59 232.3 425 38.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.0e-58 230.7 247 52.6
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 8.2e-57 225.3 405 38.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 9.1e-56 221.9 405 38.8
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.2e-53 213.4 427 36.1
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.2e-53 213.4 427 36.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 9.4e-53 211.8 433 37.4
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-52 209.1 427 36.5
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 7.9e-52 208.8 417 37.6
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.9e-52 208.8 435 37.0
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 7.9e-52 208.8 427 35.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.4e-51 208.0 427 36.1
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.4e-51 208.0 402 38.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.8e-51 207.6 436 36.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 3.0e-51 206.8 428 35.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.7e-50 202.6 356 39.3
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 4.8e-49 199.5 316 40.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 8.2e-49 198.7 418 36.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-48 198.4 433 36.7
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 7.0e-48 195.7 433 36.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.2e-47 194.9 443 34.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.6e-47 194.5 433 35.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 4.1e-40 169.9 255 44.7
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.7e-39 167.2 266 42.1
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 5.9e-39 166.0 251 43.4
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.0e-38 165.2 263 45.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.7e-38 164.5 246 42.3
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.0e-38 162.9 254 41.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.2e-37 159.8 263 41.8
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 9.4e-37 158.7 249 42.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 8.0e-36 155.6 255 40.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.3e-35 154.1 249 42.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 4.0e-35 153.3 242 39.3
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 6.8e-35 152.5 206 42.7
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 6.8e-35 152.5 255 38.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.7e-34 149.4 251 37.8
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.3e-33 148.3 210 40.5
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.2e-33 147.5 195 46.7
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-33 147.1 225 40.0
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.7e-33 146.7 222 41.9
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.1e-32 145.2 193 47.7
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.4e-32 144.1 263 39.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.4e-32 144.1 262 38.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.1e-32 143.7 264 38.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.1e-32 142.1 235 38.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.6e-31 141.4 442 30.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.0e-31 141.0 378 34.9
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.0e-31 141.0 424 30.4
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 2.0e-31 141.0 228 40.8
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.7e-31 140.6 258 36.4
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.0e-30 138.7 231 38.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.5e-29 134.0 397 29.7
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 5.5e-29 132.9 234 39.7
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 5.5e-29 132.9 207 41.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.6e-28 131.3 450 30.0
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 6.1e-28 129.4 198 39.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 6.1e-28 129.4 253 35.2
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.0e-27 128.6 426 28.4
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 9.8e-26 122.1 83 79.5
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.6e-23 114.8 262 32.8
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.6e-23 114.8 266 35.0
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.0e-23 114.4 128 54.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.3e-22 111.7 199 37.7
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.3e-22 111.7 232 34.9
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.2e-18 98.6 215 37.7
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.8e-18 95.5 124 47.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.2e-17 94.4 89 48.3
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.7e-15 87.4 172 37.2
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.3e-14 85.1 133 46.6
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-14 84.7 161 36.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.7e-14 84.7 161 36.0
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-13 82.0 158 36.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.6e-12 78.2 162 32.7
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.8e-11 74.7 51 62.7
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.2e-11 73.2 145 34.5
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 3.4e-10 70.5 153 32.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.4e-08 65.1 48 60.4


User provided reference genes

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