Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 1.4e-53 212.6 105 100.0
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 6.9e-48 193.7 104 90.4
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 1.3e-41 172.9 101 79.2
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 6.9e-40 167.2 100 78.0
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 2.6e-39 165.2 97 77.3
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 2.2e-38 162.2 97 76.3
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 8.5e-38 160.2 98 70.4
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.9e-37 159.1 97 74.2
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 4.2e-37 157.9 97 73.2
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 2.1e-36 155.6 93 74.2
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 3.6e-36 154.8 98 68.4
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 3.6e-36 154.8 97 71.1
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 4.7e-36 154.5 95 73.7
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 4.7e-36 154.5 95 73.7
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 7.9e-36 153.7 97 69.1
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.4e-35 152.9 95 72.6
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 1.8e-35 152.5 97 70.1
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 2.3e-35 152.1 98 66.3
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 3.0e-35 151.8 95 69.5
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 3.0e-35 151.8 97 71.1
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 3.0e-35 151.8 97 69.1
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 3.9e-35 151.4 97 66.0
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.1e-35 151.0 90 75.6
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.1e-34 149.8 97 70.1
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 1.1e-34 149.8 95 70.5
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.5e-34 149.4 86 75.6
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 2.0e-34 149.1 94 73.4
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 5.7e-34 147.5 99 69.7
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 9.7e-34 146.7 88 72.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.8e-33 145.2 88 71.6
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 3.7e-33 144.8 98 65.3
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 4.8e-33 144.4 95 68.4
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 4.8e-33 144.4 92 68.5
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 8.2e-33 143.7 95 67.4
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 8.2e-33 143.7 93 71.0
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 8.2e-33 143.7 100 64.0
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.1e-32 143.3 100 67.0
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 1.4e-32 142.9 96 67.7
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 1.8e-32 142.5 95 66.3
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 2.4e-32 142.1 102 61.8
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 2.4e-32 142.1 98 66.3
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 7.0e-32 140.6 74 82.4
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 7.0e-32 140.6 100 63.0
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 1.2e-31 139.8 98 66.3
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 1.2e-31 139.8 95 68.4
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 2.0e-31 139.0 92 67.4
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 2.0e-31 139.0 95 65.3
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 2.6e-31 138.7 91 65.9
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 2.6e-31 138.7 96 64.6
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 3.5e-31 138.3 100 62.0
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 4.5e-31 137.9 99 65.7
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 4.5e-31 137.9 99 63.6
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 5.9e-31 137.5 96 63.5
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 1.0e-30 136.7 98 62.2
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.3e-30 136.3 105 61.9
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 1.3e-30 136.3 96 65.6
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.3e-30 136.3 98 60.2
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 1.7e-30 136.0 97 62.9
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 1.7e-30 136.0 85 70.6
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 2.9e-30 135.2 99 62.6
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 5.0e-30 134.4 97 62.9
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 5.0e-30 134.4 97 62.9
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 6.5e-30 134.0 82 73.2
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 2.5e-29 132.1 85 69.4
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.5e-29 132.1 95 62.1
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 3.2e-29 131.7 95 64.2
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 4.2e-29 131.3 95 60.0
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 5.5e-29 131.0 92 65.2
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 7.2e-29 130.6 98 59.2
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 2.1e-28 129.0 101 59.4
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 6.1e-28 127.5 101 58.4
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.4e-27 126.3 93 62.4
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.5e-26 122.9 79 62.0
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 2.0e-26 122.5 75 74.7
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 2.6e-26 122.1 107 50.5
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 2.6e-26 122.1 107 50.5
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 2.6e-26 122.1 107 50.5
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 2.6e-26 122.1 106 50.9
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 2.6e-26 122.1 100 59.0
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 3.3e-26 121.7 110 49.1
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 4.4e-26 121.3 106 50.9
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 5.7e-26 120.9 74 64.9
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 7.5e-26 120.6 74 63.5
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 9.7e-26 120.2 74 64.9
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.3e-25 119.8 95 53.7
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 1.3e-25 119.8 96 54.2
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 1.7e-25 119.4 109 49.5
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.2e-25 119.0 74 64.9
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 2.8e-25 118.6 101 55.4
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 4.8e-25 117.9 74 64.9
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 4.8e-25 117.9 108 48.1
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 4.8e-25 117.9 108 48.1
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 6.3e-25 117.5 117 46.2
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 8.2e-25 117.1 117 46.2
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 8.2e-25 117.1 117 46.2
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 1.1e-24 116.7 98 55.1
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 1.1e-24 116.7 98 53.1
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.4e-24 116.3 93 54.8
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 1.8e-24 115.9 110 51.8
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 1.8e-24 115.9 98 53.1
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 1.8e-24 115.9 110 51.8
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 1.8e-24 115.9 98 53.1
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.8e-24 115.9 94 52.1
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 3.1e-24 115.2 74 63.5
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 4.1e-24 114.8 93 52.7
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 7.0e-24 114.0 98 52.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 9.1e-24 113.6 98 49.0
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-23 113.2 98 49.0
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.6e-23 112.8 99 49.5
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 4.5e-23 111.3 98 48.0
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 4.5e-23 111.3 98 48.0
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 4.5e-23 111.3 99 47.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 6.5e-22 107.5 91 56.0
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 6.5e-22 107.5 91 56.0
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 6.5e-22 107.5 95 49.5
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 8.5e-22 107.1 74 62.2
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 4.2e-21 104.8 59 74.6
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 8.0e-20 100.5 79 50.6
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 2.0e-18 95.9 79 51.9
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 5.9e-15 84.3 94 42.6
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 6.8e-11 70.9 69 49.3
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 1.3e-09 66.6 68 42.6
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 2.2e-09 65.9 70 41.4
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 8.3e-09 63.9 103 34.0
Mapoly0005s0134 Marchantia polymorpha HOM05D010866 ORTHO05D008854 1.1e-08 63.5 84 40.5
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 2.4e-08 62.4 103 34.0
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 4.1e-08 61.6 103 34.0
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 7.0e-08 60.8 96 37.5
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 7.0e-08 60.8 101 33.7
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 9.2e-08 60.5 59 47.5
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 9.2e-08 60.5 95 41.1
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 1.2e-07 60.1 96 31.2
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 1.2e-07 60.1 101 33.7
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.2e-07 60.1 94 31.9
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 1.2e-07 60.1 87 40.2
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 2.7e-07 58.9 101 33.7
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.7e-07 58.9 95 36.8
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 3.5e-07 58.5 97 39.2
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 3.5e-07 58.5 57 45.6
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 4.5e-07 58.2 66 43.9
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 4.5e-07 58.2 94 36.2
Gorai.007G159400 Gossypium raimondii HOM05D001848 ORTHO05D001295 5.9e-07 57.8 96 36.5
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 7.7e-07 57.4 92 34.8
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 7.7e-07 57.4 100 34.0
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 7.7e-07 57.4 89 39.3
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 7.7e-07 57.4 92 35.9
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 1.0e-06 57.0 97 34.0
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 1.7e-06 56.2 77 39.0
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.7e-06 56.2 89 39.3
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 1.7e-06 56.2 63 36.5
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 2.3e-06 55.8 85 35.3
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 2.3e-06 55.8 95 40.0
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.3e-06 55.8 103 33.0
DCAR_021416 Daucus carota HOM05D001848 ORTHO05D001295 2.3e-06 55.8 69 39.1
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 2.3e-06 55.8 94 31.9
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 2.3e-06 55.8 97 35.1
RcHm_v2.0_Chr4g0409461 Rosa chinensis HOM05D001848 ORTHO05D001295 2.3e-06 55.8 97 36.1
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 2.9e-06 55.5 60 40.0
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 2.9e-06 55.5 95 33.7
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.9e-06 55.5 103 33.0
arahy.Tifrunner.gnm1.ann1.202QP6 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.8e-06 55.1 32 68.8
CSS0017942 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 3.8e-06 55.1 95 35.8
DCAR_029929 Daucus carota HOM05D001848 ORTHO05D001295 3.8e-06 55.1 103 34.0
FAN12G2359 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.8e-06 55.1 97 36.1
FAN17G1858 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.8e-06 55.1 97 36.1
FvH4_4g11910 Fragaria vesca HOM05D001848 ORTHO05D001295 5.0e-06 54.7 97 36.1
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 5.0e-06 54.7 98 35.7
Rhsim05G0076600 Rhododendron simsii HOM05D001848 ORTHO05D001295 5.0e-06 54.7 91 37.4
FAN07G0789 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.6e-06 54.3 97 36.1
FAN22G1308 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.6e-06 54.3 97 36.1
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 6.6e-06 54.3 94 31.9
RcHm_v2.0_Chr5g0056191 Rosa chinensis HOM05D001848 ORTHO05D001295 6.6e-06 54.3 89 38.2
CANSAT11G0405 Cannabis sativa HOM05D001848 ORTHO05D001295 8.6e-06 53.9 99 32.3


User provided reference genes

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