Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 7.6e-149 530.4 257 100.0
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 5.1e-145 517.7 257 97.3
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 4.2e-139 498.0 253 93.7
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.7e-138 495.4 253 93.7
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 8.2e-135 483.8 257 89.1
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.9e-134 480.7 257 87.9
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.5e-133 479.6 255 88.6
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 2.6e-133 478.8 257 87.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 5.9e-133 477.6 257 89.1
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.9e-133 477.6 257 87.5
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.9e-133 477.6 257 87.5
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.2e-132 475.7 257 87.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 8.5e-132 473.8 253 88.9
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.4e-131 473.0 254 88.2
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.4e-131 473.0 255 87.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.5e-131 472.2 253 88.5
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 4.2e-131 471.5 255 87.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 4.2e-131 471.5 255 87.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.2e-131 470.7 255 86.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.1e-130 469.2 257 85.6
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 2.1e-130 469.2 255 86.7
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 4.7e-130 468.0 255 87.5
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.0e-129 466.8 255 86.7
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.4e-129 466.5 255 86.3
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.3e-129 465.7 255 86.7
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.0e-129 465.3 255 86.7
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.1e-128 463.4 255 85.5
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.5e-128 463.0 255 85.1
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 2.0e-128 462.6 255 85.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 4.4e-128 461.5 253 85.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.4e-128 460.7 257 85.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 9.7e-128 460.3 255 84.7
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.7e-127 459.5 255 85.1
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.7e-127 458.4 255 83.9
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 4.8e-127 458.0 255 85.5
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 4.8e-127 458.0 254 85.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 6.3e-127 457.6 255 84.7
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 8.2e-127 457.2 257 83.7
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.4e-126 456.4 253 84.6
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 9.1e-126 453.8 255 84.3
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 9.1e-126 453.8 253 84.6
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.2e-125 453.4 254 83.5
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.2e-125 453.4 253 84.2
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.6e-125 453.0 254 83.5
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.6e-125 453.0 254 84.3
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.6e-125 453.0 257 84.4
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.0e-125 452.6 255 83.5
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 2.0e-125 452.6 255 83.1
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 3.5e-125 451.8 257 83.7
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 3.5e-125 451.8 253 83.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.5e-125 451.4 253 83.4
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.9e-125 451.1 254 83.9
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 7.7e-125 450.7 254 83.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.0e-124 450.3 253 84.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.0e-124 450.3 247 87.0
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.3e-124 449.9 251 84.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.7e-124 449.5 280 78.2
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.2e-124 449.1 253 82.6
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.2e-124 449.1 255 82.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.2e-124 449.1 250 84.8
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.2e-124 449.1 255 82.4
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.2e-124 449.1 255 82.4
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.2e-124 449.1 255 82.4
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.9e-124 448.7 255 81.6
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.9e-124 448.7 255 81.6
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 3.8e-124 448.4 253 83.8
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 3.8e-124 448.4 253 83.8
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 5.0e-124 448.0 252 84.1
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 5.0e-124 448.0 251 84.1
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 8.5e-124 447.2 255 83.9
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 8.5e-124 447.2 254 84.3
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.5e-123 446.4 253 83.0
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.5e-123 446.4 251 84.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.5e-123 446.4 253 83.0
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 3.2e-123 445.3 253 82.6
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 5.5e-123 444.5 251 84.5
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 5.5e-123 444.5 254 81.5
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 7.2e-123 444.1 250 84.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.2e-122 443.4 253 82.6
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.2e-122 443.4 254 82.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 2.7e-122 442.2 252 83.7
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.6e-122 441.8 255 78.8
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.6e-122 441.8 257 81.3
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.0e-122 440.7 253 82.2
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-121 439.9 348 64.9
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.8e-121 439.5 255 80.4
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.3e-121 439.1 254 80.7
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 5.2e-121 438.0 254 79.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.0e-120 436.0 253 79.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 7.5e-120 434.1 251 80.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.7e-119 433.0 253 80.6
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.7e-119 433.0 252 82.1
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 4.8e-119 431.4 299 72.2
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 6.3e-119 431.0 251 79.3
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.4e-118 429.1 286 72.7
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.2e-116 422.5 246 80.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 5.5e-115 417.9 305 69.8
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 9.4e-115 417.2 253 77.1
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-112 409.8 249 74.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 7.5e-112 407.5 251 76.9
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.2e-111 406.0 250 76.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.7e-111 405.2 228 83.3
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.4e-110 403.3 306 64.7
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 2.4e-110 402.5 247 77.7
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 2.4e-110 402.5 254 73.2
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 9.1e-110 400.6 251 74.5
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 5.9e-109 397.9 255 70.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.9e-108 395.6 254 71.3
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-107 393.7 254 71.3
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.1e-107 393.7 347 57.9
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.5e-107 391.3 256 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 6.1e-106 387.9 250 70.8
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.1e-102 377.1 250 68.0
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 5.4e-102 374.8 253 66.4
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 9.2e-102 374.0 279 69.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.9e-101 371.3 246 68.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.9e-100 369.0 234 78.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.2e-86 320.9 235 62.1
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 7.8e-85 317.8 164 87.8
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.1e-78 297.4 162 87.7
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 4.1e-78 295.4 276 53.3
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 5.4e-78 295.0 164 85.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.9e-76 288.9 180 78.3
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.5e-75 287.0 237 59.5
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.5e-75 286.2 168 78.6
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 3.6e-74 282.3 179 73.7
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 4.4e-72 275.4 164 75.6
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.3e-71 273.9 253 57.7
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.6e-58 230.3 241 48.5
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 5.3e-49 198.7 170 62.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 5.5e-46 188.7 106 80.2
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 2.7e-45 186.4 118 72.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 5.6e-43 178.7 94 87.2
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.2e-38 162.9 94 79.8
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.1e-36 155.6 90 84.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.1e-35 154.5 107 72.9
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 6.5e-31 138.7 77 77.9
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 2.7e-21 106.7 77 63.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 3.6e-21 106.3 57 87.7
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.9e-20 102.8 54 85.2
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 5.1e-20 102.4 70 62.9
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.6e-19 100.1 55 80.0
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.3e-18 97.8 62 69.4
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.2e-15 87.0 81 55.6
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 3.6e-13 79.7 70 62.9
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 6.1e-13 79.0 47 72.3
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 7.4e-11 72.0 74 50.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.9e-08 62.4 212 23.6
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 6.5e-07 58.9 43 58.1
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 1.9e-06 57.4 32 78.1
QL11p038890 Quercus lobata HOM05D000018 ORTHO05D001172 9.4e-06 55.1 213 23.9


User provided reference genes

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