Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 1.1e-161 573.2 281 100.0
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.0e-150 535.8 272 95.2
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.3e-149 533.1 272 95.2
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.1e-145 520.0 276 90.9
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 5.6e-145 517.7 274 90.5
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-144 516.5 276 89.5
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 2.1e-144 515.8 257 97.3
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 4.7e-144 514.6 276 89.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 8.1e-144 513.8 276 90.6
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-143 513.5 276 89.1
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-143 513.5 276 89.1
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.0e-143 511.5 276 89.1
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 5.2e-143 511.1 272 90.8
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 5.2e-143 511.1 274 89.1
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.0e-142 509.2 273 89.7
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 3.4e-142 508.4 274 89.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 4.4e-142 508.1 272 90.1
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 5.8e-142 507.7 274 88.7
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.6e-142 507.3 274 88.3
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 1.3e-141 506.5 274 89.4
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.7e-141 506.1 274 89.1
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.9e-141 505.4 276 87.3
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.9e-141 505.4 274 89.1
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.9e-141 504.6 274 88.3
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 8.4e-141 503.8 274 88.7
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.4e-140 502.3 274 87.6
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 4.2e-140 501.5 274 88.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.1e-140 500.7 276 87.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.6e-139 499.6 274 87.6
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.6e-139 499.6 274 86.5
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.1e-139 499.2 274 86.9
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.5e-139 498.4 274 86.5
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.3e-138 495.7 274 86.5
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 8.7e-138 493.8 276 86.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.1e-137 493.4 274 86.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.1e-137 493.4 272 86.4
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.9e-137 492.7 274 86.5
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 3.3e-137 491.9 273 86.8
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 3.3e-137 491.9 276 85.1
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 4.3e-137 491.5 273 86.4
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 5.6e-137 491.1 274 85.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 7.3e-137 490.7 272 86.8
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.3e-136 490.0 274 85.4
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.6e-136 488.4 274 84.3
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.6e-136 488.4 273 85.3
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 4.8e-136 488.0 281 85.1
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.8e-136 488.0 274 83.9
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.8e-136 488.0 274 83.9
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 4.8e-136 488.0 272 86.8
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 6.2e-136 487.6 273 85.7
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 6.2e-136 487.6 272 86.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 6.2e-136 487.6 272 85.7
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 6.2e-136 487.6 272 86.4
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 8.1e-136 487.3 273 85.0
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 8.1e-136 487.3 274 85.0
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 8.1e-136 487.3 270 86.3
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.1e-135 486.9 274 86.5
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.1e-135 486.9 274 84.7
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.4e-135 486.5 272 86.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.4e-135 486.5 272 86.4
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.1e-135 485.3 274 84.3
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.3e-135 484.6 273 85.3
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 5.3e-135 484.6 272 85.7
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 5.3e-135 484.6 299 79.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 6.9e-135 484.2 272 86.0
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.5e-134 483.0 271 85.6
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.0e-134 482.6 272 85.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 2.0e-134 482.6 274 84.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.6e-134 482.3 272 86.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 3.4e-134 481.9 272 85.7
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 3.4e-134 481.9 273 85.7
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.8e-134 481.1 272 84.9
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 5.8e-134 481.1 273 83.9
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 5.8e-134 481.1 273 84.2
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 7.6e-134 480.7 276 83.3
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.3e-133 479.9 270 85.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.2e-133 479.2 269 85.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.2e-133 479.2 272 84.2
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 2.9e-133 478.8 272 83.1
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.9e-133 478.8 273 83.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 8.4e-133 477.2 272 84.6
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 8.4e-133 477.2 271 85.2
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.4e-132 475.7 272 84.6
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.4e-132 475.7 276 82.2
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.4e-132 475.7 367 67.3
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.6e-131 473.0 274 80.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 6.0e-131 471.1 272 83.1
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.0e-130 470.3 274 81.4
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.3e-130 469.9 273 80.6
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.8e-130 469.5 271 84.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.0e-130 468.8 272 80.9
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 6.7e-130 467.6 317 74.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.9e-129 466.1 305 75.1
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 4.3e-129 464.9 270 81.9
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.4e-127 459.9 270 80.0
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 2.6e-126 455.7 265 81.5
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 8.4e-125 450.7 325 71.4
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 4.2e-124 448.4 272 78.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.5e-123 445.3 247 85.8
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 3.3e-121 438.7 325 67.1
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 9.6e-121 437.2 270 77.4
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 8.2e-120 434.1 266 78.2
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 6.9e-119 431.0 269 76.2
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 9.0e-119 430.6 270 74.8
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.0e-118 429.5 271 73.4
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.0e-117 427.2 366 59.8
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-116 423.7 273 72.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 5.5e-116 421.4 274 71.2
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.0e-114 417.2 274 70.1
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 5.1e-114 414.8 273 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.5e-113 413.3 273 70.7
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-113 413.3 275 70.5
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 3.1e-111 405.6 298 71.1
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.2e-109 399.4 269 68.0
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.1e-108 397.1 272 66.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 8.2e-104 380.9 257 75.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.9e-100 369.8 246 69.1
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 3.1e-95 352.4 183 89.1
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.3e-88 328.2 261 59.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.2e-85 319.7 187 80.7
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 9.4e-84 314.3 295 53.6
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.2e-80 303.1 258 58.5
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 2.8e-80 302.8 271 60.5
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.1e-79 299.3 183 75.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-77 294.3 180 80.6
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.3e-77 293.9 162 87.0
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.2e-77 293.1 164 86.0
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.7e-72 276.9 179 72.6
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.8e-57 224.6 236 48.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 6.0e-54 215.3 137 73.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.5e-52 209.9 112 89.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 5.8e-49 198.7 113 84.1
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.4e-47 193.4 170 61.2
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 3.0e-45 186.4 106 79.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 9.9e-41 171.4 96 82.3
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 9.5e-36 154.8 107 72.9
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.8e-35 153.3 90 83.3
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 9.6e-28 128.3 90 64.4
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.7e-21 107.5 112 55.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.1e-21 105.9 112 51.8
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 7.3e-20 102.1 77 62.3
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 9.6e-20 101.7 62 72.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.8e-19 100.1 55 80.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.4e-15 87.0 230 28.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.3e-15 85.1 81 54.3
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 6.0e-14 82.4 47 76.6
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.3e-13 81.3 72 63.9
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 2.0e-09 67.4 74 47.3
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.1e-06 57.4 32 78.1
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 4.6e-06 56.2 43 55.8
QL11p038890 Quercus lobata HOM05D000018 ORTHO05D001172 4.6e-06 56.2 213 24.4
QL11p040202 Quercus lobata HOM05D000018 ORTHO05D001172 7.9e-06 55.5 230 24.3


User provided reference genes

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