Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 0.0e+00 1253.0 652 100.0
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 0.0e+00 1119.4 643 91.4
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 0.0e+00 1078.5 654 86.4
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 0.0e+00 1077.8 653 86.8
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 0.0e+00 1076.6 653 86.7
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 5.4e-311 1070.5 653 86.4
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 6.2e-288 993.8 642 84.3
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 2.4e-284 981.9 659 77.8
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.2e-283 979.5 654 78.1
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.1e-280 968.8 656 76.7
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.1e-279 964.9 655 76.5
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 5.8e-278 960.7 655 75.7
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.7e-277 959.1 658 76.9
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 7.1e-276 953.7 655 75.3
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.2e-275 953.0 658 76.9
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.6e-274 947.2 656 75.8
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 8.7e-274 946.8 653 76.3
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.9e-273 945.7 656 76.4
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.6e-272 942.6 654 75.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.8e-272 941.8 655 76.5
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 4.8e-272 941.0 656 75.3
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 2.0e-270 935.6 655 76.0
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 2.0e-270 935.6 657 74.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 8.4e-269 930.2 657 74.7
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.2e-267 926.4 654 74.8
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.2e-267 926.4 655 74.2
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.2e-267 926.4 654 74.6
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.6e-267 926.0 659 73.9
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.6e-267 926.0 660 75.0
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 4.6e-267 924.5 629 77.1
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.3e-266 922.9 654 74.3
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.3e-266 922.9 654 74.3
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.0e-266 921.8 657 73.8
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.0e-266 921.8 657 73.8
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.1e-265 919.8 653 74.4
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.9e-265 919.1 654 73.9
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 9.6e-265 916.8 657 73.2
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.3e-264 916.4 654 73.4
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 4.0e-263 911.4 656 73.3
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 6.9e-263 910.6 659 72.5
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 4.5e-262 907.9 640 75.6
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 5.8e-262 907.5 654 73.4
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 3.8e-261 904.8 645 74.6
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.1e-260 903.3 633 76.3
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.4e-260 902.9 658 72.6
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.6e-259 899.4 655 72.8
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 4.6e-259 897.9 665 72.2
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 7.9e-259 897.1 659 72.4
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.9e-258 894.8 656 72.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 5.1e-258 894.4 657 73.2
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 5.1e-258 894.4 653 72.9
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.1e-257 893.3 658 72.6
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.5e-257 892.1 662 71.9
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 5.7e-257 891.0 658 72.3
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 7.4e-257 890.6 654 72.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 7.4e-257 890.6 655 72.1
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 1.6e-256 889.4 654 72.0
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.8e-255 885.9 651 71.9
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.4e-255 885.6 655 71.8
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.4e-255 885.6 652 71.3
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 3.1e-255 885.2 655 72.1
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.1e-255 885.2 640 73.9
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 6.9e-255 884.0 658 71.7
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.2e-254 883.2 654 72.2
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.5e-254 882.9 655 71.8
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.5e-254 882.9 656 71.8
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 3.4e-254 881.7 657 71.7
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 5.8e-254 880.9 655 72.4
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.0e-253 880.2 655 71.3
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 8.4e-253 877.1 655 71.6
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 1.1e-252 876.7 658 71.0
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.2e-252 875.2 653 72.4
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 9.3e-252 873.6 659 71.5
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 3.5e-251 871.7 658 71.4
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 6.1e-251 870.9 662 71.3
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.0e-250 870.2 659 71.2
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.1e-250 867.8 657 69.3
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 5.1e-250 867.8 655 70.8
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.5e-249 866.3 657 70.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 5.7e-249 864.4 664 70.5
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.8e-248 862.1 657 70.6
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.1e-247 860.1 654 69.4
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 5.3e-247 857.8 656 69.7
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 3.4e-246 855.1 656 69.4
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.3e-245 853.2 591 74.8
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 3.8e-245 851.7 635 71.8
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 3.8e-245 851.7 656 68.9
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.9e-244 849.4 657 70.0
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 3.2e-244 848.6 598 73.9
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 4.2e-244 848.2 657 67.9
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.6e-243 846.3 646 69.5
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.4e-242 843.2 658 69.0
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 3.9e-242 841.6 658 69.9
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 8.8e-242 840.5 646 69.3
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.5e-241 839.7 654 69.1
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.8e-240 835.5 656 67.1
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.4e-239 833.2 656 70.0
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.8e-239 832.8 663 68.3
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 3.1e-239 832.0 654 68.5
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.2e-237 825.9 648 67.6
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.7e-235 818.9 657 66.4
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.7e-235 818.9 661 66.9
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.1e-231 803.9 657 67.6
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.7e-230 800.8 657 67.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 4.2e-228 795.0 660 65.6
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.7e-219 765.8 651 63.4
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.0e-218 762.3 652 62.7
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.2e-209 733.8 638 63.9
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 9.8e-209 730.7 657 60.3
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 5.0e-205 718.4 656 61.0
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.5e-204 716.1 654 60.6
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.4e-200 701.4 553 69.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.6e-198 696.8 657 57.1
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 9.8e-193 677.6 661 56.7
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.4e-191 673.7 648 59.6
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.0e-190 669.8 643 59.1
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.7e-190 669.5 663 55.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 6.4e-184 648.3 660 58.0
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 7.6e-169 598.2 658 53.3
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.9e-161 571.2 557 58.7
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.1e-155 553.5 634 53.3
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.5e-150 536.2 674 46.6
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.1e-143 514.6 682 45.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.1e-126 457.2 680 41.8
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 9.1e-122 441.8 350 67.4
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 9.4e-111 405.2 336 67.9
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 3.4e-92 343.6 414 48.8
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.8e-91 340.5 243 68.3
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 7.3e-63 246.1 358 46.1
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 1.6e-46 191.8 118 82.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 6.9e-45 186.4 564 29.4
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 6.9e-45 186.4 118 82.2
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.5e-39 167.9 113 81.4
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.3e-11 75.9 92 54.3
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.7e-09 68.2 118 39.0
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 3.6e-09 67.8 44 75.0
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.8e-08 63.2 51 51.0


User provided reference genes

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