Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 7.1e-74 280.4 133 100.0
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 2.2e-67 258.8 133 89.5
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 3.8e-67 258.1 133 88.0
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 8.4e-67 256.9 133 90.2
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 9.3e-66 253.4 133 86.5
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 4.6e-65 251.1 133 87.2
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 4.6e-65 251.1 133 87.2
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 4.6e-65 251.1 133 87.2
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 6.0e-65 250.8 133 87.2
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.0e-64 250.0 133 86.5
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.0e-64 250.0 133 86.5
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 8.7e-64 246.9 130 85.4
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.1e-63 246.5 129 86.8
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.5e-63 246.1 130 86.2
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 2.5e-63 245.4 132 83.3
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 2.5e-63 245.4 130 84.6
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 3.3e-63 245.0 129 85.3
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 3.3e-63 245.0 133 83.5
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 4.3e-63 244.6 130 83.8
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 4.3e-63 244.6 130 83.8
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.3e-62 243.0 133 83.5
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 1.6e-62 242.7 130 83.1
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 2.2e-62 242.3 133 81.2
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 2.2e-62 242.3 133 82.7
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 2.2e-62 242.3 130 83.8
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 3.7e-62 241.5 133 82.0
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 3.7e-62 241.5 133 83.5
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 3.7e-62 241.5 130 83.1
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 81.2
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 1.4e-61 239.6 133 83.5
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.8e-61 239.2 129 80.6
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 79.7
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 82.7
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 5.3e-61 237.7 129 82.2
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 5.3e-61 237.7 133 80.5
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 6.9e-61 237.3 130 79.2
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 6.9e-61 237.3 130 79.2
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 6.9e-61 237.3 130 80.8
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 6.9e-61 237.3 133 79.7
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 2.0e-60 235.7 133 79.7
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 2.0e-60 235.7 129 82.2
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 2.6e-60 235.3 130 81.5
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 2.6e-60 235.3 130 80.0
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 3.4e-60 235.0 133 78.9
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 82.0
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 80.0
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.3e-59 233.0 133 78.9
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 1.7e-59 232.6 134 79.1
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 2.2e-59 232.3 129 81.4
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 3.8e-59 231.5 133 77.4
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.8e-59 231.5 174 66.1
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 5.0e-59 231.1 129 79.8
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 6.5e-59 230.7 133 78.9
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.1e-58 229.9 132 78.8
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.4e-58 229.6 133 76.7
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.9e-58 229.2 133 81.2
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 3.2e-58 228.4 130 77.7
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 4.2e-58 228.0 133 79.7
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 9.4e-58 226.9 130 76.9
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 1.6e-57 226.1 130 76.9
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.6e-57 226.1 130 77.7
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 4.6e-57 224.6 127 79.5
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 6.1e-57 224.2 133 75.9
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 7.9e-57 223.8 130 76.9
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 7.9e-57 223.8 130 76.2
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 2.3e-56 222.2 133 77.4
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 2.3e-56 222.2 132 76.5
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 2.3e-56 222.2 132 76.5
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 3.0e-56 221.9 133 74.4
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 5.1e-56 221.1 133 75.2
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 5.1e-56 221.1 132 79.5
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.1e-55 219.9 135 74.1
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.0e-55 219.2 134 76.9
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.7e-55 217.6 129 75.2
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 74.4
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 9.7e-55 216.9 130 71.5
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.8e-54 215.3 133 72.9
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.4e-53 212.2 130 73.1
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 2.2e-51 205.7 130 71.5
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 1.4e-50 203.0 130 70.0
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.7e-49 198.7 129 68.2
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 2.7e-49 198.7 131 65.6
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 7.9e-49 197.2 224 47.3
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.4e-48 196.4 133 67.7
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 2.3e-48 195.7 111 79.3
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.3e-48 195.7 129 66.7
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.2e-46 189.1 131 64.1
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 2.2e-46 189.1 131 64.9
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.2e-46 189.1 131 64.1
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.2e-46 189.1 131 64.1
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 62.6
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 62.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 5.3e-45 184.5 131 64.1
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 5.3e-45 184.5 130 65.4
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 7.0e-45 184.1 131 64.1
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 3.5e-44 181.8 131 62.6
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 4.5e-44 181.4 133 61.7
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.0e-43 180.3 133 60.9
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 1.3e-43 179.9 131 61.8
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 6.5e-43 177.6 156 57.1
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 8.5e-43 177.2 131 65.6
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 3.2e-42 175.3 129 58.9
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 9.4e-42 173.7 129 59.7
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 1.1e-39 166.8 132 59.1
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 7.4e-39 164.1 135 56.3
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 6.3e-38 161.0 133 57.1
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 3.1e-37 158.7 85 85.9
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 4.1e-37 158.3 130 57.7
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 7.0e-37 157.5 85 82.4
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 2.6e-36 155.6 129 55.8
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 6.5e-35 151.0 129 53.5
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.5e-34 149.1 102 62.7
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 3.6e-33 145.2 129 51.9
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 6.8e-32 141.0 83 75.9
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.1e-29 133.7 67 89.6
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 9.1e-29 130.6 76 77.6
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 3.6e-25 118.6 120 53.3
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 5.7e-23 111.3 72 76.4
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 2.7e-20 102.4 119 46.2
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 7.2e-18 94.4 56 67.9
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 2.2e-14 82.8 48 75.0
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 4.9e-14 81.6 48 72.9
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.9e-10 69.7 53 58.5
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 5.6e-10 68.2 43 69.8
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.6e-09 66.6 47 61.7


User provided reference genes

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