Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.8e-42 175.6 97 100.0
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 3.7e-27 124.8 103 71.8
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.2e-24 115.5 95 71.6
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.0e-21 105.1 89 70.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 6.7e-21 104.0 89 69.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.6e-20 100.9 92 66.3
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 4.8e-19 97.8 91 60.4
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.1e-18 96.7 71 71.8
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.4e-18 96.3 91 57.1
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.4e-18 96.3 91 57.1
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.4e-18 95.5 74 71.6
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 3.1e-18 95.1 91 56.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 3.1e-18 95.1 91 56.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 3.1e-18 95.1 91 56.0
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.1e-18 95.1 91 60.4
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 4.0e-18 94.7 72 70.8
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 4.0e-18 94.7 84 65.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 4.0e-18 94.7 82 68.3
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.3e-18 94.4 84 66.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 9.0e-18 93.6 86 64.0
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 9.0e-18 93.6 70 68.6
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.2e-17 93.2 74 68.9
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.0e-17 92.4 94 61.7
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.0e-17 92.4 94 61.7
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.0e-17 92.4 81 67.9
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.4e-17 91.7 76 65.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 3.4e-17 91.7 71 67.6
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.4e-17 91.7 71 70.4
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.5e-17 91.3 93 61.3
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.5e-17 91.3 81 66.7
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.8e-17 90.9 70 67.1
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 5.8e-17 90.9 75 68.0
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 7.6e-17 90.5 76 67.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.0e-16 90.1 87 63.2
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.3e-16 89.7 86 61.6
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-16 89.4 88 62.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.7e-16 89.4 84 59.5
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.7e-16 89.4 91 58.2
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-16 89.0 88 62.5
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.9e-16 88.6 80 63.8
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.9e-16 88.6 93 59.1
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.9e-16 88.6 76 64.5
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.8e-16 88.2 72 66.7
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.8e-16 88.2 66 72.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 4.9e-16 87.8 70 65.7
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.9e-16 87.8 71 70.4
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 6.5e-16 87.4 87 62.1
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 6.5e-16 87.4 81 64.2
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 8.4e-16 87.0 82 62.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 8.4e-16 87.0 78 62.8
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.4e-16 87.0 70 65.7
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.4e-15 86.3 74 67.6
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.4e-15 86.3 74 63.5
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-15 86.3 85 61.2
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-15 86.3 85 61.2
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.9e-15 85.9 73 64.4
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.9e-15 85.9 71 70.4
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.9e-15 85.9 88 59.1
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.9e-15 85.9 92 55.4
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.9e-15 85.9 64 76.6
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.9e-15 85.9 85 60.0
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.5e-15 85.5 90 57.8
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.5e-15 85.5 64 75.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 3.2e-15 85.1 95 53.7
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.2e-15 85.1 73 64.4
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.2e-15 85.1 76 68.4
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 5.5e-15 84.3 77 63.6
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 5.5e-15 84.3 76 64.5
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 5.5e-15 84.3 85 61.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.5e-15 84.3 80 61.2
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 7.1e-15 84.0 95 56.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 9.3e-15 83.6 79 59.5
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 9.3e-15 83.6 66 71.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 9.3e-15 83.6 88 58.0
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.2e-14 83.2 76 59.2
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.2e-14 83.2 65 70.8
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.6e-14 82.8 76 61.8
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.6e-14 82.8 86 58.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.1e-14 82.4 66 68.2
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.1e-14 82.4 72 61.1
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.5e-14 81.6 74 59.5
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 3.5e-14 81.6 73 63.0
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.5e-14 81.6 82 63.4
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.5e-14 81.6 63 74.6
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 4.6e-14 81.3 75 61.3
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.6e-14 81.3 73 61.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 4.6e-14 81.3 82 59.8
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 6.0e-14 80.9 82 58.5
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.0e-14 80.9 72 59.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.9e-14 80.5 73 60.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 7.9e-14 80.5 73 60.3
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 7.9e-14 80.5 85 56.5
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 7.9e-14 80.5 85 56.5
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.0e-13 80.1 69 63.8
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.0e-13 80.1 84 56.0
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.3e-13 79.7 78 61.5
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.3e-13 79.7 72 63.9
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.8e-13 79.3 89 58.4
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-13 79.3 74 63.5
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.0e-13 78.6 75 66.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.1e-13 77.8 88 54.5
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 8.7e-13 77.0 85 55.3
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 8.7e-13 77.0 87 58.6
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.7e-13 77.0 87 56.3
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 8.7e-13 77.0 59 74.6
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.1e-12 76.6 71 60.6
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.5e-12 76.3 88 58.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.3e-12 74.7 66 69.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.7e-12 74.3 64 64.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 5.7e-12 74.3 63 63.5
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.7e-12 74.3 78 59.0
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.4e-12 73.9 92 54.3
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 7.4e-12 73.9 92 54.3
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.3e-11 73.2 82 53.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.3e-11 73.2 69 58.0
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.3e-11 73.2 83 59.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-11 72.4 70 62.9
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.7e-11 71.6 68 61.8
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 4.8e-11 71.2 63 68.3
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.8e-11 71.2 77 58.4
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.8e-11 71.2 67 62.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 8.2e-11 70.5 72 55.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.4e-10 68.9 68 55.9
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.4e-10 68.9 69 58.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 3.1e-10 68.6 81 51.9
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 5.3e-10 67.8 62 59.7
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 6.9e-10 67.4 76 52.6
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 9.0e-10 67.0 63 57.1
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.2e-09 66.6 76 52.6
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 1.5e-09 66.2 52 71.2
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.0e-09 65.9 69 53.6
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 3.4e-09 65.1 59 61.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.5e-09 64.7 63 57.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 4.5e-09 64.7 61 59.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 4.5e-09 64.7 74 52.7
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 4.5e-09 64.7 70 52.9
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 5.9e-09 64.3 69 55.1
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 5.9e-09 64.3 50 72.0
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 5.9e-09 64.3 69 55.1
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 1.3e-08 63.2 61 63.9
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 63.2 66 51.5
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 2.2e-08 62.4 66 57.6
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.0e-08 61.2 80 48.8
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 8.5e-08 60.5 69 47.8
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 8.5e-08 60.5 71 50.7
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.1e-07 60.1 71 52.1
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.9e-07 59.3 71 50.7
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.5e-07 58.9 69 50.7
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.5e-07 57.8 90 44.4
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 7.2e-07 57.4 69 44.9
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.7e-06 55.5 68 45.6
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.7e-06 55.5 90 44.4
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.7e-06 55.5 66 50.0
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 3.6e-06 55.1 55 58.2
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.6e-06 55.1 85 45.9
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.6e-06 55.1 83 44.6


User provided reference genes

Program Settings