Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.3e-33 145.2 85 100.0
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.6e-26 122.5 81 87.7
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.3e-25 119.4 81 86.4
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 5.1e-25 117.5 67 85.1
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.1e-24 116.3 67 85.1
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 7.4e-24 113.6 59 86.4
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.3e-23 112.8 80 70.0
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.3e-23 112.8 61 83.6
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 2.1e-23 112.1 60 85.0
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 2.1e-23 112.1 60 85.0
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 2.8e-23 111.7 61 83.6
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.8e-23 111.7 57 89.5
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 3.7e-23 111.3 61 82.0
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 4.8e-23 110.9 58 84.5
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 4.8e-23 110.9 58 84.5
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 4.8e-23 110.9 58 84.5
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 4.8e-23 110.9 59 84.7
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 8.2e-23 110.2 59 84.7
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-22 109.8 59 89.8
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.1e-22 109.8 67 77.6
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.4e-22 109.4 81 67.9
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.8e-22 109.0 59 81.4
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 2.4e-22 108.6 57 86.0
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 3.1e-22 108.2 58 81.0
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.0e-22 107.8 59 88.1
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 4.0e-22 107.8 57 86.0
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 5.3e-22 107.5 57 84.2
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 9.0e-22 106.7 57 82.5
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.2e-21 106.3 58 82.8
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.2e-21 106.3 63 77.8
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.5e-21 105.9 57 82.5
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 1.5e-21 105.9 79 65.8
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 2.0e-21 105.5 61 80.3
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 2.6e-21 105.1 66 78.8
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 4.5e-21 104.4 59 78.0
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 4.5e-21 104.4 61 75.4
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 7.6e-21 103.6 55 83.6
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 7.6e-21 103.6 61 77.0
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.3e-20 102.8 60 75.0
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.3e-20 102.8 60 75.0
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-20 102.8 61 75.4
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.7e-20 102.4 61 73.8
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 1.7e-20 102.4 61 73.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.7e-20 102.4 61 73.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 1.7e-20 102.4 61 73.8
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 1.7e-20 102.4 60 75.0
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.2e-20 102.1 61 73.8
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.2e-20 102.1 54 85.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 2.2e-20 102.1 61 77.0
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.9e-20 101.7 59 78.0
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.9e-20 101.7 59 78.0
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.9e-20 101.7 60 75.0
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.9e-20 101.7 60 75.0
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 3.8e-20 101.3 60 75.0
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.8e-20 101.3 61 75.4
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.9e-20 100.9 60 73.3
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 4.9e-20 100.9 60 73.3
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 4.9e-20 100.9 60 75.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 4.9e-20 100.9 60 73.3
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 6.5e-20 100.5 61 73.8
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.5e-20 100.5 55 89.1
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.5e-20 100.5 61 73.8
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 8.4e-20 100.1 61 72.1
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 8.4e-20 100.1 57 77.2
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-19 99.8 60 73.3
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.1e-19 99.8 63 76.2
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-19 99.4 60 71.7
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-19 99.4 60 73.3
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.4e-19 99.4 62 74.2
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.4e-19 99.4 79 60.8
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.9e-19 99.0 61 70.5
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.9e-19 99.0 62 71.0
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.9e-19 99.0 61 72.1
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.9e-19 99.0 61 72.1
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.9e-19 99.0 61 72.1
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 2.5e-19 98.6 61 72.1
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.5e-19 98.6 57 73.7
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 3.2e-19 98.2 79 62.0
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.2e-19 97.8 61 68.9
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 4.2e-19 97.8 56 76.8
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.2e-19 97.8 55 81.8
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 5.5e-19 97.4 55 80.0
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 5.5e-19 97.4 55 80.0
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 7.1e-19 97.1 60 73.3
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 7.1e-19 97.1 51 84.3
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 7.1e-19 97.1 60 70.0
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 9.3e-19 96.7 55 80.0
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.2e-18 96.3 57 75.4
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.6e-18 95.9 60 68.3
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.1e-18 95.5 60 70.0
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 2.7e-18 95.1 60 75.0
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 3.5e-18 94.7 52 82.7
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 4.6e-18 94.4 54 77.8
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 4.6e-18 94.4 54 81.5
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 7.9e-18 93.6 54 79.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.0e-17 93.2 52 76.9
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.0e-17 93.2 64 64.1
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 1.3e-17 92.8 60 70.0
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-16 89.7 60 68.3
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 5.7e-16 87.4 63 66.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.6e-15 85.9 63 65.1
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.7e-15 84.7 54 72.2
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 8.2e-15 83.6 60 61.7
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 8.2e-15 83.6 49 77.6
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.1e-14 83.2 44 86.4
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 3.1e-14 81.6 52 69.2
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 4.1e-14 81.3 45 80.0
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 5.3e-14 80.9 65 56.9
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.9e-14 80.5 53 67.9
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 7.7e-13 77.0 52 65.4
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.8e-12 74.7 54 59.3
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 1.9e-11 72.4 46 67.4
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 7.2e-11 70.5 57 56.1
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 7.2e-11 70.5 45 66.7
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 3.6e-10 68.2 35 82.9
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.1e-08 63.2 41 68.3
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.9e-08 62.4 57 56.1
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 4.3e-08 61.2 39 69.2
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.7e-07 59.3 48 56.2
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.7e-07 59.3 48 56.2
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 1.4e-06 56.2 28 85.7
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.8e-06 55.8 48 50.0


User provided reference genes

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