Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 1.3e-220 769.6 437 100.0
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 8.9e-174 614.0 475 77.3
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 2.9e-172 609.0 475 74.7
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 2.9e-156 555.8 415 71.1
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.5e-152 543.5 475 71.2
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.3e-152 542.3 475 70.9
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.1e-151 539.7 475 70.7
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.4e-150 536.2 475 70.5
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.0e-137 494.2 422 63.3
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.9e-137 492.3 395 64.8
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 6.7e-137 491.5 392 65.8
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.1e-136 490.7 411 64.2
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 9.7e-136 487.6 359 68.2
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 6.3e-135 485.0 401 64.8
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.8e-134 483.4 482 64.5
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 5.3e-134 481.9 448 60.0
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 9.0e-134 481.1 401 64.3
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 3.4e-133 479.2 403 62.8
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.7e-132 476.9 415 60.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.7e-132 476.9 397 64.5
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.8e-132 475.7 392 64.3
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.5e-132 474.6 421 60.6
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.2e-131 472.2 401 61.8
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.4e-131 471.1 433 59.4
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 2.1e-130 469.9 432 61.3
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.6e-130 469.2 402 61.9
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.4e-129 467.2 421 60.1
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 3.9e-129 465.7 379 64.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 7.4e-128 461.5 411 60.1
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 8.2e-127 458.0 399 59.9
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.2e-127 458.0 359 64.1
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.1e-126 457.6 400 60.5
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.4e-126 457.2 418 59.8
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 9.1e-126 454.5 399 59.9
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.2e-125 454.1 397 59.7
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.0e-125 453.4 431 57.3
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 4.5e-125 452.2 396 60.9
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 5.9e-125 451.8 422 58.8
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.7e-124 450.3 417 57.1
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 2.2e-124 449.9 413 58.6
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 3.2e-123 446.0 399 59.1
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.2e-122 444.1 419 57.8
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.1e-122 443.4 358 64.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 7.9e-122 441.4 412 57.3
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 7.9e-122 441.4 398 59.5
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 1.0e-121 441.0 411 57.9
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.0e-121 441.0 457 53.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.8e-121 440.3 418 57.9
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 3.3e-120 436.0 361 60.9
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 3.3e-120 436.0 369 59.6
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 4.4e-120 435.6 382 59.9
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 7.4e-120 434.9 388 58.2
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 9.7e-120 434.5 412 56.6
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 1.3e-119 434.1 398 56.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.3e-119 434.1 392 58.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 1.8e-118 430.3 400 57.8
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.8e-118 430.3 394 56.6
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 2.4e-118 429.9 381 62.5
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 3.1e-118 429.5 369 59.3
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 9.1e-118 427.9 388 57.5
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.2e-117 427.6 360 60.8
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.5e-117 427.2 376 59.8
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 3.5e-117 426.0 376 59.8
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 4.5e-117 425.6 357 59.9
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.9e-117 425.2 409 56.2
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 5.9e-117 425.2 340 64.1
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 7.7e-117 424.9 365 59.2
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.0e-116 424.5 419 56.3
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.0e-116 424.5 341 62.8
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.0e-116 424.5 341 63.0
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.7e-116 423.7 359 61.0
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 2.9e-116 422.9 340 63.2
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 3.8e-116 422.5 409 55.7
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.5e-115 420.6 414 56.5
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.5e-115 420.6 405 55.1
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 3.2e-115 419.5 410 55.4
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 3.2e-115 419.5 413 52.5
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.6e-114 417.2 452 51.3
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 4.7e-114 415.6 407 55.0
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 4.7e-114 415.6 407 55.0
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.0e-113 414.5 398 55.8
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.8e-113 413.7 418 55.0
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 3.9e-113 412.5 407 54.3
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.2e-113 412.1 416 54.1
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.5e-112 410.6 412 55.3
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 4.4e-112 409.1 416 54.1
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 9.7e-112 407.9 416 54.1
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 9.7e-112 407.9 369 56.4
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.3e-111 407.5 400 55.5
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.3e-111 407.5 440 52.0
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.3e-111 407.5 440 52.0
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 3.7e-111 406.0 369 56.1
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 3.7e-111 406.0 387 54.8
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 4.8e-111 405.6 369 56.4
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 6.3e-111 405.2 398 55.8
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 1.8e-110 403.7 419 53.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-110 403.3 369 56.1
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.1e-110 402.9 412 53.9
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 9.1e-110 401.4 322 62.7
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 9.1e-110 401.4 420 52.6
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.6e-109 399.8 370 55.7
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.9e-108 396.4 416 53.4
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 8.5e-108 394.8 369 55.3
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.1e-106 390.2 369 54.2
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 2.1e-106 390.2 369 54.2
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 3.6e-106 389.4 424 51.4
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.8e-105 387.1 446 48.4
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 5.2e-105 385.6 371 54.7
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 6.8e-105 385.2 359 55.2
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.0e-104 383.6 463 50.8
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 3.1e-102 376.3 359 54.0
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 1.2e-101 374.4 359 57.4
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-98 364.4 398 51.8
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.4e-97 360.9 335 60.6
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.8e-97 360.5 416 47.1
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 5.4e-94 349.0 363 52.3
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 2.3e-92 343.6 417 44.4
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 3.3e-91 339.7 292 59.6
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 5.5e-91 339.0 413 46.7
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 6.8e-89 332.0 292 57.9
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-88 330.9 345 53.0
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 4.4e-88 329.3 323 53.3
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.0e-84 315.8 427 46.4
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.5e-80 304.3 290 56.9
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 4.1e-78 296.2 296 53.7
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.5e-75 287.7 293 51.9
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 9.8e-72 275.0 415 43.4
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 5.1e-68 262.7 411 40.6
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.5e-67 258.5 366 45.9
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 2.3e-65 253.8 394 38.3
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-63 248.1 292 48.6
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.7e-63 247.7 296 47.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 3.7e-63 246.5 435 37.9
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 3.2e-54 216.9 408 39.2
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 9.3e-54 215.3 190 62.1
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.9e-52 209.9 344 39.2
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 3.1e-49 200.3 361 38.2
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 3.1e-49 200.3 361 38.2
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 2.2e-47 194.1 179 52.5
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.0e-41 173.3 192 51.0
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 5.8e-40 169.5 303 37.3
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.0e-36 158.7 420 32.1
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 3.9e-36 156.8 364 33.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.8e-34 150.6 203 42.4
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.7e-27 126.3 105 61.9
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 4.2e-22 110.2 167 41.3
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 2.5e-19 100.9 379 26.4
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.5e-19 100.9 124 46.0
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 7.4e-19 99.4 71 66.2
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-18 98.6 257 33.5
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.9e-17 92.8 53 83.0
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 6.9e-17 92.8 75 61.3
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 5.9e-16 89.7 86 53.5
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 5.9e-16 89.7 86 53.5
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 8.5e-15 85.9 373 26.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 8.8e-12 75.9 127 37.0
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 5.9e-08 63.2 42 71.4
Glyma.02G139950 Glycine max HOM05D002163 ORTHO05D002386 7.2e-06 56.2 61 50.8


User provided reference genes

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