Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 2.9e-243 844.7 405 100.0
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 2.1e-225 785.4 402 93.5
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 4.6e-225 784.3 402 93.8
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.4e-213 746.1 400 86.5
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.2e-210 734.9 400 85.2
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 4.4e-207 724.5 393 85.2
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.2e-206 722.2 422 80.8
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.3e-203 713.0 398 83.7
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 2.3e-200 702.2 398 80.7
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.2e-198 695.7 399 79.9
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.2e-198 695.7 396 82.8
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.8e-197 692.6 398 81.7
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 4.1e-197 691.4 398 79.4
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 5.0e-195 684.5 398 78.4
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.5e-194 682.2 398 79.6
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.5e-194 682.2 398 78.4
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 2.1e-193 679.1 397 78.1
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.7e-193 677.9 398 78.9
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 8.0e-193 677.2 398 79.6
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.0e-192 676.8 397 77.6
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.8e-192 676.0 402 78.6
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.0e-192 675.2 398 77.1
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.0e-192 674.9 402 78.4
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.2e-191 673.3 397 77.6
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 4.4e-191 671.4 398 77.6
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 4.4e-191 671.4 402 76.9
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 5.7e-191 671.0 397 77.3
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.7e-190 669.5 400 75.2
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 2.2e-190 669.1 398 76.9
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 6.3e-190 667.5 399 76.9
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 6.3e-190 667.5 400 76.0
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 8.2e-190 667.2 399 77.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 8.2e-190 667.2 412 75.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.4e-189 665.6 397 77.6
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.4e-189 665.6 400 75.5
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.1e-189 665.2 398 78.4
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 3.1e-189 665.2 400 75.8
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 5.3e-189 664.5 399 76.4
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 7.0e-189 664.1 397 76.8
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 5.9e-188 661.0 397 76.1
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 5.9e-188 661.0 400 76.2
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.0e-187 660.2 397 76.8
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.3e-187 659.8 402 75.1
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.7e-187 659.4 400 76.0
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 5.0e-187 657.9 397 76.1
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 6.5e-187 657.5 401 74.6
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 9.4e-186 653.7 396 73.7
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 9.4e-186 653.7 390 76.7
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.2e-185 653.3 398 74.4
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.2e-185 653.3 398 74.6
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.6e-185 652.9 398 75.1
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.1e-185 652.5 397 74.6
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.6e-185 651.7 397 74.8
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 8.0e-185 650.6 396 74.2
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.8e-184 649.4 396 73.0
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.8e-184 649.4 397 75.6
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 2.3e-184 649.0 399 74.4
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 4.0e-184 648.3 400 73.2
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.4e-183 644.8 401 76.3
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 7.5e-183 644.0 399 72.9
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 9.8e-183 643.7 397 73.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 9.8e-183 643.7 397 73.8
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 4.8e-182 641.3 399 72.9
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 1.8e-181 639.4 396 72.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.6e-180 636.3 397 72.8
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.0e-180 636.0 398 73.9
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 4.5e-180 634.8 458 67.0
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.9e-180 634.4 398 75.9
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 1.0e-179 633.6 396 72.2
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 5.0e-179 631.3 394 73.4
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 6.5e-179 630.9 397 72.8
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 8.6e-179 630.6 397 72.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 8.6e-179 630.6 397 72.3
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 6.1e-177 624.4 398 73.1
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 9.8e-175 617.1 421 68.6
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.7e-174 615.1 422 68.0
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.4e-173 612.5 391 73.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.1e-169 597.8 361 77.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 8.9e-168 594.0 402 67.2
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.4e-167 591.7 402 71.1
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.4e-165 585.9 398 68.8
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 7.0e-165 584.3 402 66.4
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.6e-164 583.2 438 63.5
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 3.5e-164 582.0 398 65.6
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 8.6e-163 577.4 399 65.9
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.1e-162 577.0 404 67.8
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 4.7e-161 571.6 402 68.4
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 8.0e-161 570.9 408 66.9
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 8.0e-161 570.9 402 70.1
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.1e-160 570.5 353 75.6
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 7.5e-159 564.3 319 81.5
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 9.8e-159 563.9 463 63.9
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 4.1e-157 558.5 395 64.3
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 8.6e-155 550.8 331 77.3
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 8.1e-153 544.3 320 76.6
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.5e-151 537.7 303 81.5
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 9.9e-151 537.3 411 64.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 6.4e-150 534.6 381 69.8
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 8.1e-145 517.7 346 72.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.6e-137 493.4 398 60.3
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 9.9e-135 484.2 283 78.8
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 2.7e-132 476.1 401 54.4
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.3e-131 473.8 407 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.6e-130 468.4 427 53.2
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-126 456.1 251 82.1
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.9e-126 455.3 373 60.3
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.4e-125 453.8 345 63.2
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.5e-122 443.7 413 53.3
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 9.9e-119 431.0 277 73.6
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-117 427.6 400 57.2
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.5e-114 416.4 286 68.2
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.2e-110 403.3 231 80.5
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.2e-110 403.3 231 80.5
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 4.9e-110 402.1 229 80.3
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 3.2e-109 399.4 425 46.6
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 5.5e-109 398.7 229 79.5
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.9e-87 325.5 235 68.9
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-80 304.7 164 82.9
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 4.0e-67 259.6 171 71.9
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 4.0e-67 259.6 445 37.5
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.4e-66 256.1 353 45.9
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 4.4e-66 256.1 190 66.3
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 2.3e-62 243.8 345 41.4
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.9e-61 240.7 423 35.7
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 7.2e-61 238.8 407 37.8
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 5.4e-56 222.6 206 52.9
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.4e-48 198.0 262 43.1
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 8.1e-36 155.6 144 56.9
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.1e-35 155.2 85 77.6
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.2e-34 151.8 89 77.5
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.4e-34 150.2 86 77.9
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 7.8e-31 139.0 107 64.5
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.3e-29 133.7 85 72.9
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 7.3e-29 132.5 78 82.1
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 6.2e-28 129.4 194 41.8
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.1e-27 128.6 120 53.3
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 8.9e-27 125.6 98 61.2
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 3.1e-19 100.5 97 53.6
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.0e-19 100.1 270 30.7
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 4.4e-18 96.7 70 61.4
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.6e-12 78.2 41 73.2
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 4.9e-09 66.6 44 72.7
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.9e-09 66.6 79 48.1
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.9e-07 59.3 41 70.7
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 1.0e-06 58.9 190 27.4
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.1e-06 56.6 34 61.8


User provided reference genes

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