Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.3e-290 1002.3 499 100.0
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 8.2e-240 833.6 493 83.8
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 3.1e-223 778.5 450 85.1
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.6e-219 765.0 466 81.1
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 9.8e-209 730.3 495 73.9
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 6.3e-208 727.6 496 72.8
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 3.1e-207 725.3 496 73.2
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 2.5e-204 715.7 496 71.4
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 3.3e-204 715.3 496 72.0
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 6.8e-202 707.6 460 76.5
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.8e-199 699.5 496 70.0
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 2.9e-197 692.2 496 68.5
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 3.9e-197 691.8 498 69.9
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 6.6e-197 691.0 498 69.3
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.1e-195 686.0 498 68.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.2e-191 672.2 491 67.4
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.6e-190 669.8 498 65.1
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.3e-189 666.0 473 67.4
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 3.0e-189 665.6 497 66.2
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.6e-189 664.5 487 66.1
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 8.6e-189 664.1 499 66.5
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 3.6e-187 658.7 498 63.9
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.4e-186 656.8 491 68.4
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.0e-185 652.9 496 65.3
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 4.4e-185 651.7 470 67.0
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 9.2e-183 644.0 498 63.3
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 2.1e-182 642.9 468 68.4
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 8.6e-181 637.5 475 66.3
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 8.6e-181 637.5 466 68.2
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.5e-180 636.7 475 65.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 1.2e-179 633.6 498 62.7
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 4.7e-179 631.7 499 64.3
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 8.1e-179 630.9 477 66.0
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 2.0e-177 626.3 478 66.1
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 3.4e-177 625.5 452 67.3
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 5.8e-177 624.8 458 64.6
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.8e-177 624.8 472 62.5
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.4e-175 619.4 491 61.9
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 3.2e-175 619.0 467 65.7
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.3e-173 613.6 476 64.1
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.7e-173 613.2 459 61.9
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 9.6e-172 607.4 453 64.5
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 2.8e-171 605.9 458 62.9
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 3.1e-170 602.4 479 63.5
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 6.8e-170 601.3 496 60.7
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 8.9e-170 600.9 474 60.5
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.2e-169 600.5 478 61.9
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.0e-169 599.7 496 60.5
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 2.0e-169 599.7 497 59.8
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 3.4e-169 599.0 458 62.4
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 2.2e-168 596.3 497 57.1
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 3.8e-168 595.5 454 63.9
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 8.4e-168 594.3 459 61.0
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 9.3e-167 590.9 462 62.1
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.7e-166 589.3 465 61.9
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 3.5e-166 589.0 459 62.7
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.6e-166 588.6 468 62.2
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 4.6e-166 588.6 468 62.0
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 4.6e-166 588.6 459 61.7
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 6.0e-166 588.2 490 60.0
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.0e-165 587.4 458 63.1
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.5e-164 583.6 352 80.7
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 1.5e-164 583.6 432 67.1
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 7.3e-164 581.3 458 62.4
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 3.4e-161 572.4 467 61.7
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.1e-156 557.4 454 61.9
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 5.6e-156 555.1 447 61.7
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 5.3e-154 548.5 475 59.6
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 6.9e-154 548.1 459 57.3
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 9.9e-153 544.3 475 57.7
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.3e-152 543.9 502 56.2
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 4.2e-151 538.9 473 57.5
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.2e-150 537.3 455 56.7
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 3.0e-149 532.7 449 59.0
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 6.7e-149 531.6 449 58.8
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 5.6e-148 528.5 468 57.7
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 9.6e-148 527.7 456 57.7
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.3e-147 527.3 459 57.7
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.8e-147 526.2 454 57.3
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.8e-147 526.2 449 59.0
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.8e-147 526.2 477 56.8
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 6.9e-146 521.5 449 58.4
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.0e-144 517.7 455 56.0
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.3e-144 517.3 481 57.6
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 4.2e-143 512.3 456 54.8
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.3e-141 507.3 456 56.8
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 5.1e-141 505.4 469 55.7
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 7.4e-140 501.5 338 70.1
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.3e-136 490.7 362 65.7
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 6.7e-133 478.4 359 63.2
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.3e-128 464.2 454 50.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.4e-127 460.7 470 51.5
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 9.4e-127 458.0 462 53.5
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 9.4e-127 458.0 462 53.5
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 3.1e-122 443.0 354 62.1
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 6.9e-122 441.8 475 52.2
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 2.6e-121 439.9 470 48.5
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 3.9e-117 426.0 455 47.9
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 1.5e-116 424.1 458 48.0
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 3.3e-116 422.9 373 58.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 6.5e-112 408.7 467 45.2
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 4.2e-111 406.0 339 58.7
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 8.0e-110 401.7 483 46.8
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 8.8e-109 398.3 307 61.9
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 5.9e-105 385.6 363 56.2
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 2.6e-100 370.2 413 44.6
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 9.1e-98 361.7 452 44.9
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 6.8e-93 345.5 367 51.2
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.9e-83 313.5 257 61.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 7.5e-76 288.9 329 45.3
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 9.8e-76 288.5 226 63.7
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 6.8e-69 265.8 256 51.2
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.5e-68 264.6 464 38.6
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 2.6e-68 263.8 196 68.9
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 3.7e-67 260.0 189 71.4
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 5.1e-64 249.6 208 59.6
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 6.6e-64 249.2 168 67.9
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 9.5e-63 245.4 156 79.5
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.3e-59 235.0 176 66.5
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 3.4e-44 183.7 124 67.7
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 3.5e-41 173.7 147 59.2
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 4.3e-23 113.6 146 41.1
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.2e-20 105.5 62 71.0
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.5e-15 87.8 76 51.3
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 9.7e-15 85.9 79 55.7
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 5.5e-10 70.1 61 55.7
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.4e-08 65.5 42 59.5
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 1.7e-06 58.5 123 35.0


User provided reference genes

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